Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.7e-127 459.5 263 100.0
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.8e-84 316.6 169 89.3
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 2.2e-82 309.7 266 61.3
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 5.3e-81 305.1 263 71.9
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 2.7e-80 302.8 263 60.1
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 1.3e-79 300.4 179 79.9
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.3e-79 300.4 263 70.7
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 1.7e-79 300.1 264 67.4
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 2.9e-79 299.3 179 79.9
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 2.9e-79 299.3 263 70.7
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 3.8e-79 298.9 179 78.2
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 5.0e-79 298.5 263 58.6
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 5.0e-79 298.5 179 79.9
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 8.5e-79 297.7 178 80.3
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.5e-78 297.0 179 78.8
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 2.5e-78 296.2 179 76.5
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 3.2e-78 295.8 263 65.8
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 3.2e-78 295.8 263 65.4
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 3.2e-78 295.8 180 80.0
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 4.2e-78 295.4 263 67.7
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 4.2e-78 295.4 179 78.2
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 4.2e-78 295.4 179 78.2
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 5.5e-78 295.0 179 77.1
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 5.5e-78 295.0 179 77.7
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 7.2e-78 294.7 179 76.0
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 9.4e-78 294.3 272 68.0
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 9.4e-78 294.3 263 69.2
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 1.2e-77 293.9 179 77.1
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 1.6e-77 293.5 179 76.0
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 2.1e-77 293.1 179 78.8
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 2.1e-77 293.1 178 79.2
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 2.1e-77 293.1 277 57.8
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 2.7e-77 292.7 179 77.7
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 4.7e-77 292.0 284 56.0
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 6.1e-77 291.6 263 68.8
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 8.0e-77 291.2 179 78.2
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.0e-76 290.8 179 77.1
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 1.4e-76 290.4 263 66.5
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.4e-76 290.4 178 78.7
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 1.8e-76 290.0 179 74.3
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 2.3e-76 289.7 262 66.4
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 3.0e-76 289.3 179 77.1
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 3.0e-76 289.3 180 78.3
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 4.0e-76 288.9 179 75.4
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 6.8e-76 288.1 262 67.2
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 6.8e-76 288.1 179 75.4
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 6.8e-76 288.1 263 63.5
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 6.8e-76 288.1 266 68.8
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 8.8e-76 287.7 179 77.1
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 1.2e-75 287.3 179 74.3
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 2.0e-75 286.6 179 74.3
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 4.4e-75 285.4 261 62.5
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 4.4e-75 285.4 270 56.3
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 5.7e-75 285.0 178 76.4
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 7.5e-75 284.6 177 76.3
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 7.5e-75 284.6 168 80.4
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 9.8e-75 284.3 180 73.9
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.2e-74 283.1 181 74.6
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 3.7e-74 282.3 272 55.9
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 3.1e-73 279.3 263 63.9
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 4.1e-73 278.9 262 62.2
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 1.6e-72 276.9 262 63.7
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 3.5e-72 275.8 168 76.8
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 5.9e-72 275.0 179 72.6
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 1.3e-71 273.9 209 64.6
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.3e-71 273.9 294 60.5
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.1e-70 270.8 262 60.7
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.5e-70 270.4 266 53.8
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.9e-70 270.0 179 70.9
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.5e-70 269.6 318 48.7
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 5.5e-70 268.5 264 62.1
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 5.5e-70 268.5 170 75.9
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.6e-69 266.9 169 75.7
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 4.7e-69 265.4 262 61.1
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 8.0e-69 264.6 277 65.0
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 4.0e-68 262.3 314 53.5
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.6e-67 259.6 310 50.6
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 9.8e-67 257.7 267 53.6
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 3.7e-66 255.8 267 61.4
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 6.3e-66 255.0 212 60.8
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.4e-65 253.1 206 65.0
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 1.3e-63 247.3 227 55.9
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.7e-63 246.9 193 63.7
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 2.9e-63 246.1 150 77.3
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.5e-62 243.8 145 78.6
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 4.3e-62 242.3 179 64.2
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 4.3e-62 242.3 160 72.5
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 4.3e-62 242.3 163 70.6
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 2.1e-61 240.0 148 73.0
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 8.9e-60 234.6 184 60.9
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 2.0e-59 233.4 180 60.0
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 8.6e-55 218.0 196 57.7
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 3.3e-54 216.1 261 58.6
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.2e-51 207.6 281 57.7
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 9.8e-51 204.5 400 37.5
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.3e-50 204.1 187 61.0
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 3.7e-50 202.6 125 75.2
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 1.1e-49 201.1 342 38.3
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.3e-47 194.1 282 40.4
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.7e-47 193.7 131 69.5
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 8.6e-47 191.4 154 63.0
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 1.6e-45 187.2 186 49.5
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 6.4e-42 175.3 186 65.6
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 3.5e-40 169.5 115 70.4
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 2.8e-37 159.8 117 62.4
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 5.2e-36 155.6 114 63.2
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.7e-34 150.6 98 71.4
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 4.1e-33 146.0 145 55.2
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 6.2e-29 132.1 81 75.3
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 1.1e-22 111.3 107 57.0
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 4.5e-19 99.4 99 55.6
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 3.8e-18 96.3 112 50.0
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 2.2e-10 70.5 139 49.6
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 7.4e-06 55.5 34 79.4


User provided reference genes

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