Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb114600 Zea mays HOM05D009701 ORTHO05D012112 5.6e-113 412.9 252 100.0
Zm00001eb114490 Zea mays HOM05D009701 ORTHO05D012112 1.9e-108 397.9 251 98.0
Zm00001eb114690 Zea mays HOM05D009701 ORTHO05D012112 3.5e-107 393.7 255 96.9
Zm00001eb114660 Zea mays HOM05D009701 ORTHO05D012112 1.8e-106 391.3 251 96.4
Zm00001eb065260 Zea mays HOM05D009701 ORTHO05D012112 3.5e-99 367.1 255 92.5
Zm00001eb114520 Zea mays HOM05D009701 ORTHO05D012112 1.7e-93 348.2 212 89.6
Os10g0499500 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.6e-27 129.0 179 43.6
Zm00001eb065270 Zea mays HOM05D009701 ORTHO05D012112 8.9e-26 123.2 61 98.4
Os08g0248400 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 6.4e-24 117.1 172 43.0
Zm00001eb114740 Zea mays HOM05D009701 ORTHO05D012112 8.4e-24 116.7 59 96.6
Zm00001eb345170 Zea mays HOM05D009701 ORTHO05D012112 1.5e-20 105.9 216 33.3
Os08g0107800 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 7.3e-20 103.6 171 36.3
Os10g0497432 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 2.1e-19 102.1 172 38.4
Os10g0495100 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 2.8e-19 101.7 177 36.2
Zm00001eb345130 Zea mays HOM05D009701 ORTHO05D012112 3.6e-19 101.3 216 32.4
Os10g0497300 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.4e-18 99.4 214 32.7
Os10g0495200 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.8e-18 99.0 172 37.8
Os04g0350000 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 2.4e-18 98.6 112 55.4
Os04g0349600 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 3.1e-18 98.2 145 47.6
Os04g0351333 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 4.0e-18 97.8 133 45.9
Os08g0107700 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.9e-12 79.0 129 41.1
Os08g0110200 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.3e-11 76.3 123 41.5
Zm00001eb301710 Zea mays HOM05D009701 ORTHO05D012112 4.0e-10 71.2 86 43.0
SalBow3G3365 Salvia bowleyana HOM05D000162 ORTHO05D000090 5.8e-09 67.4 105 34.3
FvH4_3g39890 Fragaria vesca HOM05D000162 ORTHO05D000090 9.9e-09 66.6 106 33.0
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 1.7e-08 65.9 123 32.5
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 3.8e-08 64.7 116 31.0
FAN21G3095 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.4e-08 63.9 106 30.2
FAN25G0667 Fragaria x ananassa HOM05D002986 ORTHO05D007611 6.4e-08 63.9 95 27.4
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 8.4e-08 63.5 115 31.3
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 8.4e-08 63.5 113 31.9
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 8.4e-08 63.5 115 31.3
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.1e-07 63.2 89 33.7
FAN03G3349 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.1e-07 63.2 113 31.9
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 1.4e-07 62.8 115 31.3
FvH4_4g07830 Fragaria vesca HOM05D002986 ORTHO05D007611 1.9e-07 62.4 93 26.9
MBI11_g20198_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.9e-07 62.4 141 27.7
Medtr1g105580 Medicago truncatula HOM05D010072 ORTHO05D011797 1.9e-07 62.4 102 35.3
vmacro08467 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.9e-07 62.4 101 30.7
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 3.2e-07 61.6 189 24.9
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 3.2e-07 61.6 156 30.1
RcHm_v2.0_Chr5g0009291 Rosa chinensis HOM05D002986 ORTHO05D007611 3.2e-07 61.6 96 27.1
FAN11G0723 Fragaria x ananassa HOM05D002986 ORTHO05D007611 4.2e-07 61.2 95 26.3
FAN16G0081 Fragaria x ananassa HOM05D002986 ORTHO05D007611 5.4e-07 60.8 95 26.3
FAN07G2492 Fragaria x ananassa HOM05D002986 ORTHO05D007611 1.2e-06 59.7 95 25.3
Lj6g0015281 Lotus japonicus HOM05D002986 ORTHO05D007611 1.2e-06 59.7 92 26.1
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 1.6e-06 59.3 95 25.3
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 1.6e-06 59.3 104 26.0
FvH4_3g08550 Fragaria vesca HOM05D002986 ORTHO05D007611 2.1e-06 58.9 96 27.1
Cc03_g00220 Coffea canephora HOM05D001779 ORTHO05D001753 2.7e-06 58.5 102 30.4
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 2.7e-06 58.5 132 28.8
Rhsim04G0247500 Rhododendron simsii HOM05D001779 ORTHO05D001753 2.7e-06 58.5 102 31.4
RcHm_v2.0_Chr5g0071481 Rosa chinensis HOM05D000162 ORTHO05D000090 2.7e-06 58.5 106 29.2
FAN16G0919 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.5e-06 58.2 78 38.5
Glyma.13G235200 Glycine max HOM05D002986 ORTHO05D007611 3.5e-06 58.2 97 24.7
Prupe.4G052800 Prunus persica HOM05D002986 ORTHO05D007611 3.5e-06 58.2 95 25.3
SMO298G0051 Selaginella moellendorffii HOM05D001779 ORTHO05D001753 3.5e-06 58.2 104 29.8
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 3.5e-06 58.2 116 29.3
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 3.5e-06 58.2 107 27.1
FAN11G2498 Fragaria x ananassa HOM05D000044 ORTHO05D000090 4.6e-06 57.8 105 29.5
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 4.6e-06 57.8 106 33.0
Actinidia05655 Actinidia chinensis HOM05D002986 ORTHO05D007611 6.0e-06 57.4 95 27.4
Actinidia08438 Actinidia chinensis HOM05D000162 ORTHO05D000090 6.0e-06 57.4 97 29.9
MBI11_g00911_MAGBIO Magnolia biondii HOM05D002986 ORTHO05D007611 6.0e-06 57.4 100 26.0
RcHm_v2.0_Chr5g0061091 Rosa chinensis HOM05D000162 ORTHO05D000090 6.0e-06 57.4 164 28.0
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 7.9e-06 57.0 97 24.7


User provided reference genes

Program Settings