Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb114480 Zea mays HOM05D002989 ORTHO05D003218 1.5e-158 562.8 273 100.0
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 1.4e-52 210.7 131 77.9
MBI11_g09455_MAGBIO Magnolia biondii HOM05D002989 ORTHO05D003218 1.5e-33 147.5 140 57.1
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 6.9e-31 138.7 136 56.6
TAR362G0937 Trochodendron aralioides HOM05D002989 ORTHO05D003218 2.0e-30 137.1 144 52.8
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 7.6e-30 135.2 139 54.0
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 2.1e-27 127.1 142 49.3
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 2.1e-27 127.1 136 53.7
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 7.9e-27 125.2 121 56.2
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 7.9e-27 125.2 138 52.2
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 1.0e-26 124.8 134 53.7
TPR.G25700 Trifolium pratense HOM05D002989 ORTHO05D003218 1.3e-26 124.4 144 49.3
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 3.0e-26 123.2 133 52.6
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 3.9e-26 122.9 137 49.6
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 3.9e-26 122.9 133 53.4
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 3.9e-26 122.9 134 52.2
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.5e-25 120.9 136 52.9
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 1.5e-25 120.9 136 52.9
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 2.5e-25 120.2 132 53.0
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 3.3e-25 119.8 140 48.6
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 4.3e-25 119.4 134 50.7
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 5.6e-25 119.0 136 50.7
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 9.6e-25 118.2 144 47.9
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 2.8e-24 116.7 135 48.1
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 3.7e-24 116.3 137 48.9
VMungo0720G0840 Vigna mungo HOM05D002989 ORTHO05D003218 3.7e-24 116.3 138 50.7
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 4.8e-24 115.9 134 51.5
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 4.8e-24 115.9 137 48.9
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 6.2e-24 115.5 137 48.2
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 6.2e-24 115.5 136 50.7
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 6.2e-24 115.5 120 53.3
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 8.1e-24 115.2 137 48.2
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 1.1e-23 114.8 137 46.0
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 1.1e-23 114.8 144 47.9
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 1.4e-23 114.4 137 47.4
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 1.4e-23 114.4 134 50.0
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 1.8e-23 114.0 144 47.9
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 2.4e-23 113.6 136 49.3
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 3.1e-23 113.2 134 47.8
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 6.9e-23 112.1 137 48.2
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 1.2e-22 111.3 138 47.1
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 2.0e-22 110.5 138 44.9
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 2.6e-22 110.2 136 47.1
Aqoxy7G03495 Aquilegia oxysepala HOM05D002989 ORTHO05D003218 2.6e-22 110.2 123 49.6
PGR044G2467 Punica granatum HOM05D002989 ORTHO05D003218 3.4e-22 109.8 134 48.5
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 4.5e-22 109.4 153 45.8
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 4.5e-22 109.4 153 45.8
CSS0014533 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 5.8e-22 109.0 120 52.5
Haze_04646 Corylus avellana HOM05D002989 ORTHO05D003218 5.8e-22 109.0 130 49.2
MD00G1147300 Malus domestica HOM05D002989 ORTHO05D003218 5.8e-22 109.0 122 54.1
MD08G1204000 Malus domestica HOM05D002989 ORTHO05D003218 5.8e-22 109.0 122 54.1
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 7.6e-22 108.6 133 48.9
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 7.6e-22 108.6 134 47.0
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 1.3e-21 107.8 133 48.9
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 1.7e-21 107.5 127 44.1
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 1.7e-21 107.5 134 47.8
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 2.2e-21 107.1 131 48.9
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 2.9e-21 106.7 132 50.0
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 4.9e-21 105.9 148 43.2
RcHm_v2.0_Chr3g0479641 Rosa chinensis HOM05D002989 ORTHO05D003218 4.9e-21 105.9 135 50.4
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 6.5e-21 105.5 154 42.2
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 6.5e-21 105.5 138 46.4
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 6.5e-21 105.5 134 46.3
Aa31LG10G17170 Aethionema arabicum HOM05D002989 ORTHO05D003218 1.1e-20 104.8 134 46.3
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 1.1e-20 104.8 138 46.4
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 1.1e-20 104.8 138 44.9
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 1.4e-20 104.4 138 41.3
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 1.9e-20 104.0 114 54.4
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.9e-20 104.0 163 41.7
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 2.5e-20 103.6 138 41.3
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 3.2e-20 103.2 125 45.6
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 4.2e-20 102.8 141 44.7
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 5.5e-20 102.4 138 42.0
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 5.5e-20 102.4 138 42.0
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 7.1e-20 102.1 133 46.6
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 9.3e-20 101.7 138 43.5
THA.LOC104809895 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 9.3e-20 101.7 140 45.0
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 1.6e-19 100.9 122 43.4
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 1.6e-19 100.9 143 45.5
Sc17g0001190 Simmondsia chinensis HOM05D002989 ORTHO05D003218 1.6e-19 100.9 142 40.8
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 2.1e-19 100.5 142 40.8
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 2.1e-19 100.5 116 49.1
AL5G46180 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.5e-19 99.8 132 46.2
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 4.6e-19 99.4 138 41.3
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 4.6e-19 99.4 139 43.2
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 6.0e-19 99.0 144 41.0
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 7.9e-19 98.6 131 42.7
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 1.8e-18 97.4 132 41.7
HanXRQChr09g0240651 Helianthus annuus HOM05D002989 ORTHO05D003218 1.1e-17 94.7 137 42.3
MD00G1147800 Malus domestica HOM05D002989 ORTHO05D003218 1.1e-17 94.7 130 46.9
unitig_0.g140 Utricularia gibba HOM05D002989 ORTHO05D003218 1.5e-17 94.4 127 43.3
TAR365G0266 Trochodendron aralioides HOM05D002989 ORTHO05D003218 1.9e-17 94.0 140 45.0
Nitab4.5_0003775g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.5e-17 93.6 182 38.5
Sp5g00210 Schrenkiella parvula HOM05D002989 ORTHO05D003218 4.3e-17 92.8 115 46.1
HanXRQChr09g0240611 Helianthus annuus HOM05D002989 ORTHO05D003218 9.6e-17 91.7 138 41.3
HanXRQChr09g0240711 Helianthus annuus HOM05D002989 ORTHO05D003218 1.6e-16 90.9 127 41.7
HanXRQChr09g0240681 Helianthus annuus HOM05D002989 ORTHO05D003218 2.1e-16 90.5 123 42.3
HPP92_020349 Vanilla planifolia HOM05D002989 ORTHO05D003218 4.8e-16 89.4 99 52.5
MD00G1147600 Malus domestica HOM05D002989 ORTHO05D003218 1.1e-15 88.2 131 38.9
Cpa.g.sc52.115 Carica papaya HOM05D002989 ORTHO05D003218 6.9e-15 85.5 69 62.3
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 1.5e-14 84.3 82 51.2
Actinidia21825 Actinidia chinensis HOM05D002989 ORTHO05D003218 2.0e-14 84.0 117 43.6
QL05p073831 Quercus lobata HOM05D002989 ORTHO05D003218 1.0e-13 81.6 136 38.2
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 2.9e-13 80.1 88 50.0
SEGI_15483 Sequoiadendron giganteum HOM05D017310 ORTHO05D003218 3.8e-13 79.7 165 32.7
GSVIVG01003115001 Vitis vinifera HOM05D002989 ORTHO05D003218 3.8e-13 79.7 122 36.9
Lj2C1165T16 Lonicera japonica HOM05D002989 ORTHO05D003218 6.5e-13 79.0 117 42.7
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 8.4e-13 78.6 99 49.5
QL12p042129 Quercus lobata HOM05D000097 ORTHO05D003218 2.5e-12 77.0 59 59.3
EL10Ac5g10495 Beta vulgaris HOM05D002989 ORTHO05D003218 5.5e-12 75.9 92 45.7
MSTRG.21529 Avicennia marina HOM05D002989 ORTHO05D003218 1.2e-11 74.7 115 35.7
Lsat_1_v5_gn_9_7521 Lactuca sativa HOM05D002989 ORTHO05D003218 1.6e-11 74.3 133 40.6
Peaxi162Scf00230g00019 Petunia axillaris HOM05D002989 ORTHO05D003218 2.1e-11 73.9 97 45.4
Cfa006195 Carpinus fangiana HOM05D002989 ORTHO05D003218 2.7e-11 73.6 122 36.9
TWI60G1134 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 3.5e-11 73.2 136 33.8
DCAR_012504 Daucus carota HOM05D002989 ORTHO05D003218 4.6e-11 72.8 120 40.0
QL12p042048 Quercus lobata HOM05D002989 ORTHO05D003218 4.6e-11 72.8 139 35.3
Actinidia19960 Actinidia chinensis HOM05D002989 ORTHO05D003218 6.1e-11 72.4 117 41.0
CSS0037436 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 6.1e-11 72.4 127 40.2
vmacro02611 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 6.1e-11 72.4 123 39.8
Rhsim13G0028600 Rhododendron simsii HOM05D002989 ORTHO05D003218 7.9e-11 72.0 117 39.3
QL12p042043 Quercus lobata HOM05D002989 ORTHO05D003218 1.0e-10 71.6 143 33.6
Nitab4.5_0001044g0020 Nicotiana tabacum HOM05D002989 ORTHO05D003218 1.3e-10 71.2 113 36.3
Manes.01G204300 Manihot esculenta HOM05D002989 ORTHO05D003218 2.3e-10 70.5 116 38.8
Duzib114G0118 Durio zibethinus HOM05D002989 ORTHO05D003218 3.0e-10 70.1 114 36.8
vmacro02612 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 3.0e-10 70.1 121 38.8
HanXRQChr11g0338821 Helianthus annuus HOM05D002989 ORTHO05D003218 3.9e-10 69.7 116 35.3
Rhsim01G0068400 Rhododendron simsii HOM05D002989 ORTHO05D003218 3.9e-10 69.7 114 40.4
Sopen06g035490 Solanum pennellii HOM05D002989 ORTHO05D003218 5.1e-10 69.3 116 34.5
Nitab4.5_0013316g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 4.3e-09 66.2 121 32.2
AT3G63320 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 5.7e-09 65.9 94 42.6
PGR019G0005 Punica granatum HOM05D002989 ORTHO05D003218 5.7e-09 65.9 97 42.3
unitig_0.g137 Utricularia gibba HOM05D002989 ORTHO05D003218 5.7e-09 65.9 119 34.5
CAN.G771.9 Capsicum annuum HOM05D002989 ORTHO05D003218 1.3e-08 64.7 110 36.4
Migut.D00361 Erythranthe guttata HOM05D002989 ORTHO05D003218 1.3e-08 64.7 117 36.8
Cc01_g19040 Coffea canephora HOM05D002989 ORTHO05D003218 1.6e-08 64.3 115 38.3
AUR62032286 Chenopodium quinoa HOM05D002989 ORTHO05D003218 2.2e-08 63.9 127 32.3
Ciclev10023714m.g Citrus clementina HOM05D002989 ORTHO05D003218 2.2e-08 63.9 115 33.0
Lsat_1_v5_gn_5_185781 Lactuca sativa HOM05D002989 ORTHO05D003218 2.2e-08 63.9 111 38.7
CDE05G1038 Ceratophyllum demersum HOM05D003967 ORTHO05D004531 2.8e-08 63.5 36 69.4
THA.LOC104813803 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 4.8e-08 62.8 79 40.5
TWI60G0894 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 4.8e-08 62.8 111 35.1
SalBow4G0873 Salvia bowleyana HOM05D002989 ORTHO05D003218 8.2e-08 62.0 114 33.3
Potri.005G214500 Populus trichocarpa HOM05D002989 ORTHO05D003218 2.4e-07 60.5 115 33.9
Atru.chr5.1516 Acer truncatum HOM05D002989 ORTHO05D003218 5.3e-07 59.3 115 33.0
PGSC0003DMG402020059 Solanum tuberosum HOM05D002989 ORTHO05D003218 6.9e-07 58.9 38 65.8
Psat0s4150g0200 Pisum sativum HOM05D002989 ORTHO05D003218 1.2e-06 58.2 53 60.4
Haze_04649 Corylus avellana HOM05D002989 ORTHO05D003218 1.5e-06 57.8 38 68.4
QL05p073579 Quercus lobata HOM05D002989 ORTHO05D003218 1.0e-05 55.1 75 42.7


User provided reference genes

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