Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.9e-57 224.9 107 100.0
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 4.5e-18 94.7 53 79.2
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.2e-17 92.4 53 77.4
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.3e-14 83.2 53 67.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.3e-14 83.2 53 67.9
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.3e-14 83.2 53 67.9
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.3e-14 83.2 53 67.9
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.3e-14 83.2 53 67.9
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-14 83.2 53 67.9
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 6.7e-14 80.9 53 66.0
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 6.7e-14 80.9 53 66.0
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 6.7e-14 80.9 53 66.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 6.7e-14 80.9 53 66.0
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 6.7e-14 80.9 53 66.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 8.7e-14 80.5 53 66.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 8.7e-14 80.5 53 66.0
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 8.7e-14 80.5 53 66.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.1e-13 80.1 53 64.2
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.1e-13 80.1 53 66.0
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 2.5e-13 79.0 53 66.0
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.5e-13 79.0 53 66.0
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.5e-13 79.0 53 66.0
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.3e-13 78.6 53 62.3
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 3.3e-13 78.6 53 64.2
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 4.3e-13 78.2 53 64.2
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 4.3e-13 78.2 53 64.2
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 4.3e-13 78.2 53 64.2
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 4.3e-13 78.2 53 62.3
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 4.3e-13 78.2 53 62.3
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 4.3e-13 78.2 62 56.5
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.3e-13 78.2 53 64.2
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.3e-13 78.2 53 62.3
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 5.6e-13 77.8 53 66.0
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.6e-13 77.8 53 64.2
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 7.4e-13 77.4 53 62.3
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 7.4e-13 77.4 53 62.3
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 7.4e-13 77.4 53 64.2
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 9.6e-13 77.0 53 64.2
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 9.6e-13 77.0 53 62.3
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.3e-12 76.6 53 64.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.3e-12 76.6 53 64.2
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.3e-12 76.6 53 64.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.6e-12 76.3 53 60.4
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.6e-12 76.3 53 60.4
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.6e-12 76.3 53 62.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.6e-12 76.3 53 60.4
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.1e-12 75.9 53 60.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.1e-12 75.9 53 62.3
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.1e-12 75.9 53 64.2
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.1e-12 75.9 53 64.2
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.1e-12 75.9 53 60.4
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.1e-12 75.9 53 62.3
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.8e-12 75.5 53 62.3
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.8e-12 75.5 53 62.3
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 3.7e-12 75.1 53 60.4
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 3.7e-12 75.1 53 60.4
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 3.7e-12 75.1 53 62.3
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 4.8e-12 74.7 53 60.4
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.8e-12 74.7 53 60.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 6.2e-12 74.3 53 64.2
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 6.2e-12 74.3 53 62.3
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 6.2e-12 74.3 53 62.3
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 8.2e-12 73.9 53 58.5
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.1e-11 73.6 53 60.4
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.4e-11 73.2 53 60.4
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.4e-11 73.2 52 61.5
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.4e-11 73.2 53 60.4
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.8e-11 72.8 53 60.4
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.8e-11 72.8 53 60.4
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.8e-11 72.8 53 58.5
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.8e-11 72.8 53 60.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.8e-11 72.8 53 60.4
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 2.4e-11 72.4 53 58.5
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 3.1e-11 72.0 53 58.5
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.3e-11 71.2 53 58.5
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 5.3e-11 71.2 53 58.5
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 5.3e-11 71.2 53 58.5
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 9.0e-11 70.5 52 59.6
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 9.0e-11 70.5 53 58.5
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 9.0e-11 70.5 53 58.5
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.2e-10 70.1 53 56.6
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.5e-10 69.7 53 56.6
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.5e-10 69.7 53 58.5
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.5e-10 69.7 53 54.7
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.0e-10 69.3 53 56.6
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.0e-10 69.3 53 54.7
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.6e-10 68.9 53 56.6
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.6e-10 68.9 53 56.6
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.6e-10 68.9 53 58.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.6e-10 68.9 53 58.5
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.4e-10 68.6 53 58.5
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.4e-10 68.6 53 58.5
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 4.5e-10 68.2 54 55.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.5e-10 68.2 53 56.6
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 4.5e-10 68.2 53 60.4
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.6e-10 67.4 53 56.6
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-09 67.0 53 56.6
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-09 67.0 53 56.6
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-09 67.0 53 56.6
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-09 67.0 53 56.6
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.0e-09 67.0 53 56.6
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.0e-09 67.0 53 54.7
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.7e-09 66.2 53 54.7
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.7e-09 66.2 53 54.7
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-09 66.2 53 54.7
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-09 66.2 53 54.7
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.7e-09 66.2 53 54.7
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.7e-09 66.2 53 54.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.7e-09 66.2 53 56.6
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.2e-08 62.0 50 60.0
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 4.2e-08 61.6 76 42.1
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 5.5e-08 61.2 53 56.6
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.1e-07 59.3 49 51.0
Zm00001eb400250 Zea mays HOM05D004640 ORTHO05D442505 2.1e-07 59.3 31 96.8
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 4.6e-07 58.2 40 65.0
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 6.0e-07 57.8 44 59.1


User provided reference genes

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