Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb113430 Zea mays HOM05D003412 ORTHO05D003962 2.1e-68 262.3 139 100.0
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 8.9e-35 150.6 198 51.5
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 3.4e-34 148.7 198 51.0
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 3.0e-30 135.6 196 47.4
Zm00001eb075980 Zea mays HOM05D003412 ORTHO05D003962 3.1e-27 125.6 68 97.1
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 1.1e-21 107.1 196 41.3
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 2.1e-20 102.8 198 36.9
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 1.4e-19 100.1 194 39.2
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 4.0e-19 98.6 194 39.2
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 4.0e-19 98.6 194 39.2
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 4.0e-19 98.6 194 38.1
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 5.2e-19 98.2 198 37.9
Zm00001eb322900 Zea mays HOM05D031683 ORTHO05D446584 5.2e-19 98.2 94 63.8
Gohir.A13G113600 Gossypium hirsutum HOM05D003412 ORTHO05D003962 8.9e-19 97.4 194 38.7
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 8.9e-19 97.4 194 38.1
Zm00001eb431540 Zea mays HOM05D031683 ORTHO05D443892 8.9e-19 97.4 94 63.8
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 1.2e-18 97.1 194 37.6
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 1.2e-18 97.1 194 36.6
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.2e-18 97.1 196 37.2
EL10Ac4g09549 Beta vulgaris HOM05D003412 ORTHO05D003962 1.5e-18 96.7 195 37.4
Zm00001eb323680 Zea mays HOM05D031683 ORTHO05D443567 1.5e-18 96.7 83 68.7
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 2.0e-18 96.3 194 38.1
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 2.6e-18 95.9 191 38.2
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 2.6e-18 95.9 194 38.1
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 2.6e-18 95.9 194 38.1
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 2.6e-18 95.9 194 37.6
Lj5A319T47 Lonicera japonica HOM05D003412 ORTHO05D003962 5.8e-18 94.7 194 36.1
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 9.9e-18 94.0 194 36.1
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 9.9e-18 94.0 194 36.1
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 9.9e-18 94.0 194 37.1
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 9.9e-18 94.0 194 37.6
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 9.9e-18 94.0 196 37.8
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 1.7e-17 93.2 194 36.6
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 2.9e-17 92.4 194 37.1
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 3.8e-17 92.0 194 36.6
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 8.4e-17 90.9 195 37.4
PSO761G0645 Papaver somniferum HOM05D003412 ORTHO05D003962 8.4e-17 90.9 194 36.1
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 8.4e-17 90.9 193 37.3
CAN.G1248.24 Capsicum annuum HOM05D003412 ORTHO05D003962 1.1e-16 90.5 187 38.0
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.1e-16 90.5 196 35.7
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 1.4e-16 90.1 203 35.0
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 1.4e-16 90.1 218 36.2
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 1.9e-16 89.7 196 35.7
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 1.9e-16 89.7 194 36.1
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 2.4e-16 89.4 191 38.2
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 3.2e-16 89.0 198 36.4
PSO210G2054 Papaver somniferum HOM05D003412 ORTHO05D003962 3.2e-16 89.0 194 35.6
SalBow1G0001 Salvia bowleyana HOM05D003412 ORTHO05D003962 4.2e-16 88.6 194 35.1
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 4.2e-16 88.6 194 37.1
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 4.2e-16 88.6 194 35.1
Atru.chr12.1551 Acer truncatum HOM05D003412 ORTHO05D003962 5.4e-16 88.2 191 36.6
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 5.4e-16 88.2 195 36.4
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 5.4e-16 88.2 194 34.0
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 5.4e-16 88.2 195 33.8
Oeu000100.1 Olea europaea HOM05D003412 ORTHO05D003962 7.1e-16 87.8 187 35.8
Zm00001eb052040 Zea mays HOM05D003412 ORTHO05D003962 7.1e-16 87.8 68 66.2
Phvul.007G204500 Phaseolus vulgaris HOM05D003412 ORTHO05D003962 9.3e-16 87.4 187 38.0
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 1.6e-15 86.7 194 34.0
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 2.1e-15 86.3 198 34.8
Zm00001eb080250 Zea mays HOM05D003412 ORTHO05D003962 2.7e-15 85.9 50 88.0
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 4.6e-15 85.1 194 34.5
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 4.6e-15 85.1 203 35.5
SGA_v2.0_scaffold117G32404 Striga asiatica HOM05D003412 ORTHO05D003962 1.3e-14 83.6 201 35.3
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.3e-14 83.6 131 41.2
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 2.3e-14 82.8 191 34.0
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 2.3e-14 82.8 194 35.6
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 2.3e-14 82.8 194 36.1
Zm00001eb129850 Zea mays HOM05D003412 ORTHO05D003962 3.9e-14 82.0 159 40.3
CARHR009430 Cardamine hirsuta HOM05D003412 ORTHO05D003962 6.6e-14 81.3 198 31.8
Rhsim11G0101700 Rhododendron simsii HOM05D003412 ORTHO05D003962 6.6e-14 81.3 137 39.4
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 8.7e-14 80.9 194 35.6
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 8.7e-14 80.9 194 34.5
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 8.7e-14 80.9 214 36.0
Oeu029183.1 Olea europaea HOM05D003412 ORTHO05D003962 8.7e-14 80.9 187 32.6
SGA_v2.0_scaffold279G46784 Striga asiatica HOM05D003412 ORTHO05D003962 1.1e-13 80.5 201 34.3
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 1.5e-13 80.1 196 32.7
Carub.0006s2442 Capsella rubella HOM05D003412 ORTHO05D003962 1.9e-13 79.7 196 32.7
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 2.5e-13 79.3 131 40.5
TAR636G2549 Trochodendron aralioides HOM05D003412 ORTHO05D003962 5.6e-13 78.2 195 34.9
MBI18_g09639_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 7.3e-13 77.8 199 34.2
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 9.6e-13 77.4 195 35.9
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 9.6e-13 77.4 193 32.6
Lalb_Chr04g0260311 Lupinus albus HOM05D003412 ORTHO05D003962 1.3e-12 77.0 191 34.0
Peaxi162Scf00357g00017 Petunia axillaris HOM05D003412 ORTHO05D003962 1.3e-12 77.0 204 34.8
Carub.0001s0882 Capsella rubella HOM05D003412 ORTHO05D003962 1.6e-12 76.6 196 31.1
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 1.6e-12 76.6 196 33.2
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 1.6e-12 76.6 196 32.7
Thhalv10008143m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 2.1e-12 76.3 196 31.1
Sp1g08080 Schrenkiella parvula HOM05D003412 ORTHO05D003962 8.1e-12 74.3 196 30.1
THA.LOC104821745 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 8.1e-12 74.3 196 31.1
CDE08G0751 Ceratophyllum demersum HOM05D003412 ORTHO05D003962 1.1e-11 73.9 198 30.8
Aa31LG11G9870 Aethionema arabicum HOM05D003412 ORTHO05D003962 6.9e-11 71.2 194 30.9
Aa31LG1G5630 Aethionema arabicum HOM05D003412 ORTHO05D003962 6.9e-11 71.2 193 30.6
Glyma.20G092900 Glycine max HOM05D003412 ORTHO05D003962 6.9e-11 71.2 194 33.5
C05p07470 Brassica napus HOM05D003412 ORTHO05D003962 9.0e-11 70.9 178 31.5
THA.LOC104818749 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 1.2e-10 70.5 196 30.6
Lj9C230G11 Lonicera japonica HOM05D003412 ORTHO05D003962 1.5e-10 70.1 194 30.4
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 2.6e-10 69.3 194 32.0
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 2.6e-10 69.3 194 32.0
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 2.6e-10 69.3 196 31.1
Cc02_g35780 Coffea canephora HOM05D003412 ORTHO05D003962 3.4e-10 68.9 121 41.3
Oeu061921.1 Olea europaea HOM05D003412 ORTHO05D003962 4.4e-10 68.6 104 44.2
CSS0037128 Camellia sinensis var. sinensis HOM05D003412 ORTHO05D003962 9.9e-10 67.4 186 31.7
Lju99C6G3 Lonicera japonica HOM05D003412 ORTHO05D003962 1.7e-09 66.6 167 32.3
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 2.2e-09 66.2 194 30.9
FvH4_6g08410 Fragaria vesca HOM05D003412 ORTHO05D003962 2.9e-09 65.9 187 34.8
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 3.8e-09 65.5 190 31.1
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 3.8e-09 65.5 101 43.6
A06p06180 Brassica napus HOM05D003412 ORTHO05D003962 4.9e-09 65.1 174 31.0
Hund07273 Selenicereus undatus HOM05D003412 ORTHO05D003962 6.4e-09 64.7 200 31.0
SEGI_01307 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 6.4e-09 64.7 196 28.6
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 1.1e-08 63.9 194 28.9
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 1.1e-08 63.9 196 29.6
Os01g0292700 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 1.1e-08 63.9 137 37.2
unitig_22.g5801 Utricularia gibba HOM05D003412 ORTHO05D003962 1.4e-08 63.5 193 30.6
AT5G26770 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 1.9e-08 63.2 193 29.0
BraA06t23830Z Brassica rapa HOM05D003412 ORTHO05D003962 4.2e-08 62.0 178 29.8
CARHR080290 Cardamine hirsuta HOM05D003412 ORTHO05D003962 4.2e-08 62.0 197 28.9
Hund07277 Selenicereus undatus HOM05D003412 ORTHO05D003962 5.4e-08 61.6 200 30.5
HanXRQChr03g0088701 Helianthus annuus HOM05D003412 ORTHO05D003962 1.6e-07 60.1 121 37.2
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 2.1e-07 59.7 194 30.9
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 2.7e-07 59.3 196 30.1
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 3.5e-07 58.9 193 28.5
THA.LOC104816843 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 4.6e-07 58.5 185 28.1
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 6.0e-07 58.2 196 27.6
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 1.3e-06 57.0 191 28.3
AUR62006809 Chenopodium quinoa HOM05D003412 ORTHO05D003962 2.3e-06 56.2 62 48.4
AUR62000468 Chenopodium quinoa HOM05D003412 ORTHO05D003962 3.0e-06 55.8 200 28.5
BcaNung03912 Brassica carinata HOM05D003412 ORTHO05D003962 3.9e-06 55.5 196 29.1
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 6.6e-06 54.7 58 50.0
BraA06t26626Z Brassica rapa HOM05D003412 ORTHO05D003962 6.6e-06 54.7 58 50.0
Migut.N00969 Erythranthe guttata HOM05D003412 ORTHO05D003962 6.6e-06 54.7 192 30.2
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 8.7e-06 54.3 196 27.6


User provided reference genes

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