Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb113350 Zea mays HOM05D006645 ORTHO05D008129 1.0e-76 290.0 148 100.0
Os11g0528500 Oryza sativa ssp. japonica HOM05D006645 ORTHO05D008129 1.5e-48 196.4 150 72.7
Thecc.03G141700 Theobroma cacao HOM05D006645 ORTHO05D008129 1.6e-45 186.4 136 69.1
VMungo0251G1538 Vigna mungo HOM05D006645 ORTHO05D008129 1.6e-45 186.4 155 63.9
vmacro19114 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 3.5e-45 185.3 126 73.8
vmacro19194 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 3.5e-45 185.3 126 73.8
Duzib084G1311 Durio zibethinus HOM05D006645 ORTHO05D008129 1.7e-44 183.0 159 61.6
HanXRQChr09g0273781 Helianthus annuus HOM05D006645 ORTHO05D008129 8.6e-44 180.6 128 69.5
Phvul.002G280900 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 8.6e-44 180.6 155 62.6
Gohir.A12G194100 Gossypium hirsutum HOM05D006645 ORTHO05D008129 1.1e-43 180.3 166 59.0
Gohir.D12G196500 Gossypium hirsutum HOM05D006645 ORTHO05D008129 1.9e-43 179.5 166 58.4
Duzib205G0637 Durio zibethinus HOM05D006645 ORTHO05D008129 3.3e-43 178.7 159 59.7
PGR142G3652 Punica granatum HOM05D006645 ORTHO05D008129 4.2e-43 178.3 117 70.1
Rhsim08G0198600 Rhododendron simsii HOM05D006645 ORTHO05D008129 4.2e-43 178.3 160 60.6
CSS0045487 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 9.5e-43 177.2 159 61.0
CSS0048618 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 9.5e-43 177.2 159 61.0
Nn4g22122 Nelumbo nucifera HOM05D006645 ORTHO05D008129 1.2e-42 176.8 166 58.4
Gorai.008G211100 Gossypium raimondii HOM05D006645 ORTHO05D008129 1.6e-42 176.4 166 57.8
Manes.06G127300 Manihot esculenta HOM05D006645 ORTHO05D008129 2.1e-42 176.0 136 65.4
CiPaw.12G000500 Carya illinoinensis HOM05D006645 ORTHO05D008129 2.8e-42 175.6 125 68.0
Cpa.g.sc2215.2 Carica papaya HOM05D006645 ORTHO05D008129 4.7e-42 174.9 167 58.7
TWI14G0928 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 4.7e-42 174.9 127 68.5
TAR371G0070 Trochodendron aralioides HOM05D006645 ORTHO05D008129 8.0e-42 174.1 129 64.3
TWI39G0437 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 1.0e-41 173.7 164 59.1
TAR622G0574 Trochodendron aralioides HOM05D006645 ORTHO05D008129 1.0e-41 173.7 113 71.7
CARHR257180 Cardamine hirsuta HOM05D006645 ORTHO05D008129 2.3e-41 172.6 142 62.0
CAN.G1008.52 Capsicum annuum HOM05D006645 ORTHO05D008129 3.0e-41 172.2 157 61.8
COL.COLO4_37268 Corchorus olitorius HOM05D006645 ORTHO05D008129 4.0e-41 171.8 159 60.4
GSVIVG01008662001 Vitis vinifera HOM05D006645 ORTHO05D008129 4.0e-41 171.8 97 81.4
Lsat_1_v5_gn_4_84301 Lactuca sativa HOM05D006645 ORTHO05D008129 5.2e-41 171.4 126 66.7
SGA_v2.0_scaffold37G14674 Striga asiatica HOM05D006645 ORTHO05D008129 5.2e-41 171.4 140 62.1
Aqoxy3G01868 Aquilegia oxysepala HOM05D006645 ORTHO05D008129 6.8e-41 171.0 158 55.7
arahy.Tifrunner.gnm1.ann1.1BW3L6 Arachis hypogaea HOM05D006645 ORTHO05D008129 6.8e-41 171.0 142 65.5
BcaC01g06113 Brassica carinata HOM05D006645 ORTHO05D008129 6.8e-41 171.0 103 76.7
Dinv23234 Davidia involucrata HOM05D006645 ORTHO05D008129 6.8e-41 171.0 99 77.8
Migut.I00665 Erythranthe guttata HOM05D006645 ORTHO05D008129 6.8e-41 171.0 159 57.9
Eucgr.K02190 Eucalyptus grandis HOM05D006645 ORTHO05D008129 6.8e-41 171.0 126 65.1
Sopen03g037030 Solanum pennellii HOM05D006645 ORTHO05D008129 6.8e-41 171.0 155 61.3
THA.LOC104811555 Tarenaya hassleriana HOM05D006645 ORTHO05D008129 6.8e-41 171.0 139 63.3
CDE05G2456 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 8.9e-41 170.6 151 60.3
FvH4_5g09700 Fragaria vesca HOM05D006645 ORTHO05D008129 8.9e-41 170.6 122 68.0
Hma1.2p1_0452F.1_g155930 Hydrangea macrophylla HOM05D006645 ORTHO05D008129 8.9e-41 170.6 131 65.6
Solyc03g118130.3 Solanum lycopersicum HOM05D006645 ORTHO05D008129 8.9e-41 170.6 154 61.7
arahy.Tifrunner.gnm1.ann1.D72E2J Arachis hypogaea HOM05D006645 ORTHO05D008129 1.2e-40 170.2 142 64.8
AUR62032209 Chenopodium quinoa HOM05D006645 ORTHO05D008129 1.5e-40 169.9 119 70.6
Glyma.05G199700 Glycine max HOM05D006645 ORTHO05D008129 1.5e-40 169.9 154 61.0
RcHm_v2.0_Chr7g0188541 Rosa chinensis HOM05D006645 ORTHO05D008129 1.5e-40 169.9 134 64.2
Sabra15G0130800 Salix brachista HOM05D006645 ORTHO05D008129 1.5e-40 169.9 104 74.0
Ca_10875_v3 Cicer arietinum L. HOM05D006645 ORTHO05D008129 2.0e-40 169.5 102 75.5
Lalb_Chr08g0237591 Lupinus albus HOM05D006645 ORTHO05D008129 2.0e-40 169.5 125 67.2
SalBow7G0306 Salvia bowleyana HOM05D006645 ORTHO05D008129 2.0e-40 169.5 138 63.0
PGSC0003DMG400014238 Solanum tuberosum HOM05D006645 ORTHO05D008129 2.0e-40 169.5 158 59.5
BcaC01g06063 Brassica carinata HOM05D006645 ORTHO05D008129 2.6e-40 169.1 104 75.0
C03p19310 Brassica napus HOM05D006645 ORTHO05D008129 2.6e-40 169.1 104 75.0
BolC3t14317H Brassica oleracea HOM05D006645 ORTHO05D008129 2.6e-40 169.1 104 75.0
CDE05G3351 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 2.6e-40 169.1 165 56.4
Potri.015G108100 Populus trichocarpa HOM05D006645 ORTHO05D008129 2.6e-40 169.1 106 71.7
Sabra15G0128400 Salix brachista HOM05D006645 ORTHO05D008129 2.6e-40 169.1 106 72.6
arahy.Tifrunner.gnm1.ann1.Z544U3 Arachis hypogaea HOM05D006645 ORTHO05D008129 4.4e-40 168.3 124 67.7
Carub.0008s1101 Capsella rubella HOM05D006645 ORTHO05D008129 4.4e-40 168.3 154 59.7
Cc04_g05780 Coffea canephora HOM05D006645 ORTHO05D008129 4.4e-40 168.3 129 65.1
Psat5g055480 Pisum sativum HOM05D006645 ORTHO05D008129 4.4e-40 168.3 102 73.5
Peaxi162Scf00314g00728 Petunia axillaris HOM05D006645 ORTHO05D008129 5.7e-40 167.9 164 56.1
Ciclev10032925m.g Citrus clementina HOM05D006645 ORTHO05D008129 7.5e-40 167.5 151 59.6
Dinv13711 Davidia involucrata HOM05D006645 ORTHO05D008129 7.5e-40 167.5 129 65.1
AL8G25220 Arabidopsis lyrata HOM05D006645 ORTHO05D008129 9.8e-40 167.2 151 60.3
A03p16420 Brassica napus HOM05D006645 ORTHO05D008129 9.8e-40 167.2 140 61.4
BraA03t10932Z Brassica rapa HOM05D006645 ORTHO05D008129 9.8e-40 167.2 140 61.4
Lj4g0018315 Lotus japonicus HOM05D006645 ORTHO05D008129 9.8e-40 167.2 126 65.9
Prupe.5G140400 Prunus persica HOM05D006645 ORTHO05D008129 9.8e-40 167.2 103 73.8
Sc22g0003260 Simmondsia chinensis HOM05D006645 ORTHO05D008129 9.8e-40 167.2 109 67.9
arahy.Tifrunner.gnm1.ann1.FT61ID Arachis hypogaea HOM05D006645 ORTHO05D008129 1.3e-39 166.8 124 67.7
Nitab4.5_0000976g0110 Nicotiana tabacum HOM05D006645 ORTHO05D008129 1.3e-39 166.8 160 60.6
Sp6g13160 Schrenkiella parvula HOM05D006645 ORTHO05D008129 1.3e-39 166.8 128 64.8
Ah.11g046980 Amaranthus hybridus HOM05D006645 ORTHO05D008129 2.2e-39 166.0 127 66.9
EL10Ac5g11273 Beta vulgaris HOM05D006645 ORTHO05D008129 2.2e-39 166.0 127 66.9
ECA232G4473 Erigeron canadensis HOM05D000001 ORTHO05D001247 2.2e-39 166.0 124 65.3
Phvul.009G160600 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 2.2e-39 166.0 123 65.0
AUR62043377 Chenopodium quinoa HOM05D006645 ORTHO05D008129 3.7e-39 165.2 125 67.2
Thhalv10014834m.g Eutrema salsugineum HOM05D006645 ORTHO05D008129 3.7e-39 165.2 145 60.0
unitig_52.g17484 Utricularia gibba HOM05D006645 ORTHO05D008129 3.7e-39 165.2 124 63.7
Actinidia18289 Actinidia chinensis HOM05D006645 ORTHO05D008129 6.3e-39 164.5 160 55.6
MSTRG.22813 Avicennia marina HOM05D006645 ORTHO05D008129 6.3e-39 164.5 138 60.9
Haze_07089 Corylus avellana HOM05D006645 ORTHO05D008129 6.3e-39 164.5 143 60.1
DCAR_016335 Daucus carota HOM05D006645 ORTHO05D008129 6.3e-39 164.5 137 61.3
FAN13G1824 Fragaria x ananassa HOM05D006645 ORTHO05D008129 6.3e-39 164.5 122 66.4
Glyma.04G202300 Glycine max HOM05D006645 ORTHO05D008129 8.3e-39 164.1 163 55.8
Glyma.08G007200 Glycine max HOM05D006645 ORTHO05D008129 8.3e-39 164.1 157 59.2
MD06G1129100 Malus domestica HOM05D006645 ORTHO05D008129 1.1e-38 163.7 151 58.9
Aa31LG3G7470 Aethionema arabicum HOM05D006645 ORTHO05D008129 1.4e-38 163.3 104 73.1
ClCG06G018300 Citrullus lanatus HOM05D006645 ORTHO05D008129 1.8e-38 162.9 120 66.7
Lj1g0000604 Lotus japonicus HOM05D006645 ORTHO05D008129 1.8e-38 162.9 160 60.6
PSO017G3202 Papaver somniferum HOM05D006645 ORTHO05D008129 3.1e-38 162.2 172 53.5
CsaV3_1G000140 Cucumis sativus L. HOM05D006645 ORTHO05D008129 4.1e-38 161.8 129 62.0
Medtr3g098520 Medicago truncatula HOM05D006645 ORTHO05D008129 4.1e-38 161.8 141 59.6
PSO478G4148 Papaver somniferum HOM05D006645 ORTHO05D008129 4.1e-38 161.8 172 53.5
ATR0582G272 Amborella trichopoda HOM05D006645 ORTHO05D008129 5.4e-38 161.4 166 51.8
AT5G51010 Arabidopsis thaliana HOM05D006645 ORTHO05D008129 5.4e-38 161.4 152 58.6
MD14G1146000 Malus domestica HOM05D006645 ORTHO05D008129 5.4e-38 161.4 122 63.9
Hund10027 Selenicereus undatus HOM05D006645 ORTHO05D008129 5.4e-38 161.4 108 68.5
Atru.chr6.1936 Acer truncatum HOM05D006645 ORTHO05D008129 7.0e-38 161.0 102 71.6
Oeu013667.1 Olea europaea HOM05D006645 ORTHO05D008129 1.2e-37 160.2 110 71.8
Nitab4.5_0010893g0030 Nicotiana tabacum HOM05D006645 ORTHO05D008129 2.9e-36 155.6 159 58.5
Lj9A488T61 Lonicera japonica HOM05D006645 ORTHO05D008129 6.1e-34 147.9 104 67.3
Sed0010334 Sechium edule HOM05D006645 ORTHO05D008129 3.0e-33 145.6 133 57.1
SMO116G0387 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 1.5e-32 143.3 163 52.8
Lj5C86G18 Lonicera japonica HOM05D006645 ORTHO05D008129 6.4e-31 137.9 145 53.8
Actinidia25512 Actinidia chinensis HOM05D006645 ORTHO05D008129 8.3e-31 137.5 83 72.3
Mapoly0188s0012 Marchantia polymorpha HOM05D006645 ORTHO05D008129 7.0e-30 134.4 105 61.0
MELO3C026168.2 Cucumis melo HOM05D006645 ORTHO05D008129 1.0e-28 130.6 104 62.5
Pp3c20_8260 Physcomitrium patens HOM05D006645 ORTHO05D008129 1.5e-27 126.7 101 60.4
SEGI_04043 Sequoiadendron giganteum HOM05D006645 ORTHO05D008129 1.6e-26 123.2 95 61.1
QL10p000304 Quercus lobata HOM05D006645 ORTHO05D008129 3.6e-26 122.1 263 33.8
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 3.1e-25 119.0 118 54.2
Glyma.17G183301 Glycine max HOM05D006645 ORTHO05D008129 2.7e-13 79.3 58 65.5
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 6.2e-10 68.2 110 39.1
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 5.2e-09 65.1 105 36.2
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 8.9e-09 64.3 105 34.3
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 8.9e-09 64.3 107 35.5
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 1.5e-08 63.5 95 34.7
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.0e-08 63.2 105 33.3
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 2.0e-08 63.2 105 33.3
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.6e-08 62.8 105 33.3
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 2.6e-08 62.8 113 31.0
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 2.6e-08 62.8 85 35.3
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 5.8e-08 61.6 105 33.3
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 7.6e-08 61.2 106 34.9
Pp3c2_6110 Physcomitrium patens HOM05D006645 ORTHO05D008129 9.9e-08 60.8 96 36.5
AagrBONN_evm.TU.Sc2ySwM_362.1750 Anthoceros agrestis HOM05D006645 ORTHO05D008129 1.3e-07 60.5 98 35.7
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 1.3e-07 60.5 105 32.4
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 1.7e-07 60.1 105 33.3
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 1.7e-07 60.1 114 32.5
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 2.2e-07 59.7 105 33.3
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 2.9e-07 59.3 67 41.8
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 2.9e-07 59.3 105 33.3
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 2.9e-07 59.3 105 31.4
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 2.9e-07 59.3 105 31.4
SMO165G0067 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 2.9e-07 59.3 64 43.8
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 3.8e-07 58.9 88 33.0
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 3.8e-07 58.9 88 33.0
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 3.8e-07 58.9 105 32.4
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 3.8e-07 58.9 105 32.4
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 3.8e-07 58.9 88 34.1
Cre24.g755197 Chlamydomonas reinhardtii HOM05D006645 ORTHO05D008129 4.9e-07 58.5 124 35.5
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 6.4e-07 58.2 110 33.6
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 6.4e-07 58.2 105 31.4
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 8.4e-07 57.8 105 29.5
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 8.4e-07 57.8 105 31.4
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 8.4e-07 57.8 67 41.8
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 8.4e-07 57.8 105 32.4
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 1.1e-06 57.4 102 32.4
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 1.1e-06 57.4 114 31.6
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 1.1e-06 57.4 124 29.0
GSVIVG01024454001 Vitis vinifera HOM05D006062 ORTHO05D007613 1.1e-06 57.4 105 30.5
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 1.4e-06 57.0 102 31.4
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 1.4e-06 57.0 95 32.6
Migut.F00106 Erythranthe guttata HOM05D006062 ORTHO05D007613 1.4e-06 57.0 107 33.6
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 1.4e-06 57.0 67 40.3
Pp3c14_10490 Physcomitrium patens HOM05D006645 ORTHO05D008129 1.4e-06 57.0 96 34.4
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 1.4e-06 57.0 67 41.8
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 1.4e-06 57.0 114 32.5
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 1.4e-06 57.0 54 42.6
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 1.4e-06 57.0 54 42.6
Carub.0006s1536 Capsella rubella HOM05D006062 ORTHO05D007613 1.9e-06 56.6 105 32.4
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 1.9e-06 56.6 105 31.4
CiPaw.06G020400 Carya illinoinensis HOM05D006062 ORTHO05D007613 1.9e-06 56.6 105 30.5
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 1.9e-06 56.6 105 32.4
FvH4_7g33550 Fragaria vesca HOM05D006062 ORTHO05D007613 1.9e-06 56.6 107 32.7
BcaC03g18534 Brassica carinata HOM05D006062 ORTHO05D007613 2.4e-06 56.2 105 32.4
BcaNung00424 Brassica carinata HOM05D006062 ORTHO05D007613 2.4e-06 56.2 105 32.4
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 2.4e-06 56.2 82 32.9
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 2.4e-06 56.2 107 32.7
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 2.4e-06 56.2 107 32.7
RcHm_v2.0_Chr1g0383771 Rosa chinensis HOM05D006062 ORTHO05D007613 2.4e-06 56.2 102 31.4
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 2.4e-06 56.2 105 31.4
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 3.2e-06 55.8 42 50.0
FAN03G0703 Fragaria x ananassa HOM05D006062 ORTHO05D007613 3.2e-06 55.8 88 34.1
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 3.2e-06 55.8 114 32.5
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 4.2e-06 55.5 107 31.8
Actinidia18696 Actinidia chinensis HOM05D006062 ORTHO05D007613 5.4e-06 55.1 102 30.4
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 5.4e-06 55.1 67 38.8
SGA_v2.0_scaffold18G08502 Striga asiatica HOM05D006062 ORTHO05D007613 5.4e-06 55.1 105 32.4
BolC2t06792H Brassica oleracea HOM05D006062 ORTHO05D007613 7.1e-06 54.7 107 31.8
Mapoly0119s0028 Marchantia polymorpha HOM05D006645 ORTHO05D008129 7.1e-06 54.7 41 58.5
Ca_24458_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 9.2e-06 54.3 91 30.8
Ca_24464_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 9.2e-06 54.3 91 30.8


User provided reference genes

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