Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 8.1e-41 169.9 79 100.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 3.7e-38 161.0 79 94.9
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 8.9e-32 139.8 77 85.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.7e-30 135.6 79 74.7
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.9e-30 134.0 79 72.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.4e-30 133.3 79 74.7
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.4e-29 132.5 79 72.2
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.4e-29 132.5 79 73.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 2.4e-29 131.7 79 70.9
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.4e-29 131.7 79 73.4
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.2e-29 131.3 79 72.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 4.1e-29 131.0 79 73.4
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 5.4e-29 130.6 79 72.2
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 7.1e-29 130.2 79 70.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 7.1e-29 130.2 79 70.9
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 9.2e-29 129.8 79 70.9
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 9.2e-29 129.8 79 72.2
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 9.2e-29 129.8 79 69.6
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.2e-28 129.4 79 72.2
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.6e-28 129.0 79 70.9
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.6e-28 129.0 79 69.6
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-28 128.6 79 68.4
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.7e-28 128.3 79 70.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.7e-28 128.3 79 72.2
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.7e-28 128.3 79 72.2
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.5e-28 127.9 78 70.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.5e-28 127.9 79 72.2
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.6e-28 127.5 79 68.4
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.6e-28 127.5 78 70.5
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 4.6e-28 127.5 76 72.4
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.6e-28 127.5 78 69.2
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 6.0e-28 127.1 78 70.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.0e-28 127.1 78 70.5
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 6.0e-28 127.1 79 68.4
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 6.0e-28 127.1 79 67.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 7.8e-28 126.7 79 70.9
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.8e-28 126.7 79 69.6
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 7.8e-28 126.7 79 69.6
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.0e-27 126.3 79 67.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.0e-27 126.3 79 70.9
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.0e-27 126.3 79 69.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.0e-27 126.3 79 67.1
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.0e-27 126.3 76 71.1
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.3e-27 125.9 79 68.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.3e-27 125.9 78 69.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.3e-27 125.9 79 65.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.3e-27 125.9 76 71.1
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.3e-27 125.9 79 68.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-27 125.9 78 69.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.7e-27 125.6 79 67.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.7e-27 125.6 79 68.4
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.7e-27 125.6 79 69.6
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 2.3e-27 125.2 79 68.4
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.3e-27 125.2 79 65.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.3e-27 125.2 79 65.8
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.3e-27 125.2 79 68.4
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.3e-27 125.2 79 67.1
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.3e-27 125.2 76 71.1
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.0e-27 124.8 79 67.1
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 3.0e-27 124.8 79 67.1
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 3.0e-27 124.8 78 67.9
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.9e-27 124.4 79 68.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.9e-27 124.4 79 68.4
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.9e-27 124.4 79 69.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 3.9e-27 124.4 79 67.1
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 3.9e-27 124.4 77 70.1
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.9e-27 124.4 76 69.7
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.9e-27 124.4 79 67.1
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 5.1e-27 124.0 79 68.4
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 5.1e-27 124.0 77 68.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 5.1e-27 124.0 79 67.1
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.1e-27 124.0 79 67.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 6.6e-27 123.6 79 67.1
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 8.7e-27 123.2 79 67.1
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 8.7e-27 123.2 79 68.4
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 8.7e-27 123.2 79 68.4
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 8.7e-27 123.2 78 69.2
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.1e-26 122.9 79 67.1
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-26 122.9 79 67.1
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.1e-26 122.9 79 68.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.1e-26 122.9 79 65.8
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.9e-26 122.1 79 67.1
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.9e-26 122.1 79 65.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.5e-26 121.7 94 61.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 2.5e-26 121.7 79 67.1
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.5e-26 121.7 79 64.6
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.3e-26 121.3 79 65.8
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 3.3e-26 121.3 79 65.8
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 3.3e-26 121.3 79 64.6
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 3.3e-26 121.3 76 67.1
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 4.3e-26 120.9 79 68.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 5.6e-26 120.6 79 67.1
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 5.6e-26 120.6 78 65.4
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 5.6e-26 120.6 78 69.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 5.6e-26 120.6 79 65.8
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 9.6e-26 119.8 77 68.8
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 9.6e-26 119.8 79 64.6
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.2e-25 119.4 81 66.7
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.2e-25 119.4 76 65.8
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.2e-25 119.4 79 65.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.1e-25 118.6 72 70.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 2.1e-25 118.6 79 65.8
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.7e-25 117.5 76 64.5
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 4.7e-25 117.5 76 64.5
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 6.2e-25 117.1 79 63.3
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 6.2e-25 117.1 78 61.5
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 6.2e-25 117.1 79 64.6
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-24 116.3 86 61.6
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.1e-24 116.3 79 62.0
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.4e-24 115.2 78 62.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.4e-24 115.2 79 65.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 5.2e-24 114.0 79 65.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.2e-24 114.0 81 61.7
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 9.0e-24 113.2 79 64.6
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 2.0e-23 112.1 76 61.8
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.6e-23 111.7 79 65.8
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.6e-23 111.7 64 73.4
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 3.4e-23 111.3 93 58.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 4.4e-23 110.9 62 75.8
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.4e-23 110.9 62 75.8
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.8e-23 110.5 115 49.6
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 5.8e-23 110.5 76 59.2
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 7.6e-23 110.2 62 74.2
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.2e-22 108.6 64 71.9
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 3.8e-22 107.8 68 67.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 4.2e-21 104.4 63 69.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 5.4e-21 104.0 64 68.8
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 7.1e-21 103.6 76 60.5
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.3e-18 94.7 76 51.3
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.6e-18 94.0 61 68.9
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.6e-17 91.3 63 65.1
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 3.6e-17 91.3 58 65.5
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.1e-13 79.7 67 56.7
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.2e-13 78.2 79 51.9
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.7e-09 64.7 63 42.9
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.8e-08 62.4 65 44.6
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 5.3e-08 60.8 39 66.7
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.5e-07 57.8 41 58.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.8e-06 54.7 35 62.9


User provided reference genes

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