Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb112970 Zea mays HOM05D018994 ORTHO05D001647 4.4e-68 261.2 131 100.0
Os11g0479000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 4.4e-36 154.8 123 66.7
Os12g0465100 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 4.8e-22 108.2 116 46.6
Os12g0465000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 5.5e-18 94.7 125 39.2
Os11g0502700 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 1.1e-15 87.0 97 46.4
MBI07_g02003_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 2.8e-14 82.4 100 42.0
Zm00001eb170050 Zea mays HOM05D018994 ORTHO05D001647 5.3e-13 78.2 99 45.5
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 5.9e-12 74.7 110 37.3
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 5.9e-12 74.7 110 37.3
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 7.6e-12 74.3 117 35.9
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.0e-11 73.9 122 36.9
MBI18_g29804_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 2.7e-09 65.9 99 37.4
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 3.5e-09 65.5 121 35.5
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 3.5e-09 65.5 111 35.1
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 3.5e-09 65.5 111 35.1
TAR371G0865 Trochodendron aralioides HOM05D001817 ORTHO05D001647 3.5e-09 65.5 123 31.7
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 4.6e-09 65.1 117 35.9
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 6.1e-09 64.7 121 36.4
HPP92_021690 Vanilla planifolia HOM05D001817 ORTHO05D001647 6.1e-09 64.7 110 39.1
HPP92_021712 Vanilla planifolia HOM05D001817 ORTHO05D001647 7.9e-09 64.3 110 39.1
Glyma.20G204300 Glycine max HOM05D001817 ORTHO05D001647 1.0e-08 63.9 122 34.4
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 1.0e-08 63.9 119 31.9
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.3e-08 63.5 111 34.2
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 1.8e-08 63.2 95 40.0
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 2.3e-08 62.8 120 35.0
VMungo0720G1259 Vigna mungo HOM05D001817 ORTHO05D001647 2.3e-08 62.8 115 35.7
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 3.0e-08 62.4 121 34.7
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 3.9e-08 62.0 117 36.8
CAN.G111.7 Capsicum annuum HOM05D001817 ORTHO05D001647 8.7e-08 60.8 99 37.4
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 8.7e-08 60.8 116 33.6
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 8.7e-08 60.8 123 33.3
CsaV3_3G046190 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.1e-07 60.5 109 35.8
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 1.1e-07 60.5 114 28.1
Lj4g0004287 Lotus japonicus HOM05D001817 ORTHO05D001647 1.1e-07 60.5 122 30.3
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 1.5e-07 60.1 113 33.6
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 1.9e-07 59.7 115 34.8
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 2.5e-07 59.3 117 34.2
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.5e-07 59.3 118 33.9
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.5e-07 59.3 121 33.9
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 2.5e-07 59.3 113 30.1
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 2.5e-07 59.3 113 30.1
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 2.5e-07 59.3 119 28.6
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 2.5e-07 59.3 118 31.4
Lalb_Chr21g0316211 Lupinus albus HOM05D001817 ORTHO05D001647 3.3e-07 58.9 115 35.7
ATR0582G316 Amborella trichopoda HOM05D001817 ORTHO05D001647 4.3e-07 58.5 101 35.6
CDE06G0004 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 5.7e-07 58.2 98 36.7
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 7.4e-07 57.8 122 28.7
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 7.4e-07 57.8 122 27.9
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 7.4e-07 57.8 98 31.6
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 7.4e-07 57.8 117 33.3
Zm00001eb266630 Zea mays HOM05D018994 ORTHO05D001647 7.4e-07 57.8 79 46.8
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 9.7e-07 57.4 119 31.9
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 9.7e-07 57.4 115 31.3
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 9.7e-07 57.4 124 30.6
Zm00001eb170500 Zea mays HOM05D001817 ORTHO05D001647 9.7e-07 57.4 127 32.3
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 1.3e-06 57.0 125 33.6
Sopen10g024580 Solanum pennellii HOM05D001817 ORTHO05D001647 1.3e-06 57.0 73 39.7
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 1.6e-06 56.6 115 33.0
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.6e-06 56.6 122 28.7
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 2.2e-06 56.2 122 33.6
FAN04G2963 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.2e-06 56.2 122 33.6
FAN08G2754 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.2e-06 56.2 122 33.6
FAN18G1420 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.2e-06 56.2 122 33.6
Glyma.10G186200 Glycine max HOM05D001817 ORTHO05D001647 2.2e-06 56.2 123 33.3
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 2.8e-06 55.8 123 31.7
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 2.8e-06 55.8 118 30.5
Lj4g0027202 Lotus japonicus HOM05D001817 ORTHO05D001647 3.7e-06 55.5 122 32.8
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 3.7e-06 55.5 118 31.4
TPR.G3595 Trifolium pratense HOM05D001817 ORTHO05D001647 3.7e-06 55.5 123 32.5
Lj4g0020170 Lotus japonicus HOM05D001817 ORTHO05D001647 4.8e-06 55.1 98 35.7
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 4.8e-06 55.1 121 28.1
HPP92_021711 Vanilla planifolia HOM05D001817 ORTHO05D001647 6.3e-06 54.7 106 31.1


User provided reference genes

Program Settings