Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 3.4e-107 391.7 204 100.0
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 2.9e-58 229.2 212 62.3
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.5e-51 206.8 195 57.9
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.3e-50 203.8 195 56.9
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 1.4e-49 200.3 195 55.9
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 1.6e-48 196.8 198 54.5
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.6e-48 196.8 195 55.4
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 2.7e-48 196.1 195 54.9
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 7.9e-48 194.5 195 54.9
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 1.0e-47 194.1 193 56.0
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 2.3e-47 193.0 195 55.4
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 3.0e-47 192.6 195 55.9
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 5.1e-47 191.8 203 51.7
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 5.1e-47 191.8 141 70.2
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 1.5e-46 190.3 195 53.3
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.3e-46 189.1 195 52.3
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 7.4e-46 188.0 195 51.8
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 7.4e-46 188.0 195 53.3
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 9.6e-46 187.6 195 52.3
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 9.6e-46 187.6 195 52.3
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 1.6e-45 186.8 195 53.8
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.1e-45 186.4 195 52.3
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 2.1e-45 186.4 195 52.3
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 4.8e-45 185.3 195 52.3
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 6.3e-45 184.9 201 50.7
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 6.3e-45 184.9 195 51.8
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 8.2e-45 184.5 195 51.8
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 1.4e-44 183.7 195 52.8
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.1e-44 182.6 195 52.3
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 3.1e-44 182.6 196 54.6
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 3.1e-44 182.6 195 52.3
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 5.3e-44 181.8 195 51.8
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 5.3e-44 181.8 195 52.8
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 6.9e-44 181.4 201 50.7
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 6.9e-44 181.4 201 50.2
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 6.9e-44 181.4 195 50.3
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 1.2e-43 180.6 195 51.3
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.2e-43 180.6 195 52.3
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.2e-43 180.6 195 53.3
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.0e-43 179.9 201 50.2
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.6e-43 179.5 194 51.5
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 4.5e-43 178.7 195 52.3
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 5.9e-43 178.3 195 50.8
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 5.9e-43 178.3 193 52.8
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 7.6e-43 177.9 195 51.8
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 7.6e-43 177.9 207 49.8
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 1.3e-42 177.2 195 50.8
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 1.7e-42 176.8 194 51.0
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 2.9e-42 176.0 195 50.8
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.9e-42 176.0 195 50.8
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 3.8e-42 175.6 196 51.5
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 3.8e-42 175.6 191 51.3
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 3.8e-42 175.6 197 52.8
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 6.5e-42 174.9 197 52.8
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 6.5e-42 174.9 195 48.7
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 8.5e-42 174.5 195 50.8
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 1.1e-41 174.1 195 51.3
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 1.1e-41 174.1 197 52.8
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 1.9e-41 173.3 191 51.3
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.9e-41 173.3 199 48.7
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.9e-41 173.3 195 50.8
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 4.2e-41 172.2 199 49.2
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 4.2e-41 172.2 190 50.5
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 9.3e-41 171.0 194 46.9
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.3e-41 171.0 213 46.9
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.6e-40 170.2 221 46.6
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.6e-40 170.2 194 50.0
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 1.6e-40 170.2 197 49.7
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 3.6e-40 169.1 195 47.7
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 4.6e-40 168.7 199 47.7
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 4.6e-40 168.7 194 49.0
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 6.1e-40 168.3 195 45.6
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 1.0e-39 167.5 199 48.7
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 1.8e-39 166.8 191 50.3
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 1.8e-39 166.8 199 47.7
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 8.7e-39 164.5 200 48.0
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 8.7e-39 164.5 200 48.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.5e-38 163.7 200 48.0
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 4.3e-38 162.2 200 47.5
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 4.3e-38 162.2 142 57.0
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 5.7e-38 161.8 195 44.6
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 4.1e-36 155.6 165 52.1
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 5.3e-36 155.2 195 45.6
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 6.9e-36 154.8 199 44.7
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 9.0e-36 154.5 130 60.8
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 1.2e-35 154.1 172 51.2
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 1.5e-35 153.7 165 51.5
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 2.0e-35 153.3 130 57.7
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 2.6e-35 152.9 203 46.3
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 3.8e-34 149.1 270 40.4
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 6.5e-34 148.3 207 41.1
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.1e-33 147.5 167 52.7
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.5e-33 146.4 164 50.6
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.9e-31 139.0 226 39.4
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 2.0e-30 136.7 145 52.4
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.0e-30 136.7 191 41.4
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.0e-30 136.7 196 41.8
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 2.0e-30 136.7 132 56.8
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 3.4e-27 125.9 113 55.8
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 8.5e-26 121.3 110 55.5
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 1.9e-25 120.2 137 44.5
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 5.5e-25 118.6 117 54.7
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 2.7e-24 116.3 110 56.4
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.6e-22 109.8 140 43.6
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 7.7e-11 71.6 79 49.4
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 2.9e-10 69.7 84 51.2
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.6e-08 62.8 39 69.2
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 3.0e-07 59.7 123 28.5


User provided reference genes

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