Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 3.2e-249 864.8 475 100.0
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.6e-184 649.8 476 77.5
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.5e-142 508.1 454 58.8
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.9e-141 505.4 462 59.3
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 2.3e-138 496.5 495 56.8
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.7e-136 488.8 446 58.7
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.0e-134 483.4 448 57.6
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 7.5e-134 481.5 450 55.8
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 8.3e-133 478.0 457 56.7
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.1e-132 477.6 486 55.3
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.4e-132 475.3 459 56.6
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 3.5e-131 472.6 454 56.8
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.6e-131 472.2 494 53.6
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.0e-130 471.1 466 56.2
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.3e-130 470.7 465 55.1
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.7e-130 470.3 467 54.4
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.7e-130 470.3 451 56.1
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.6e-130 468.0 466 55.6
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 8.6e-130 468.0 451 56.3
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.1e-129 467.6 499 53.3
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.5e-129 466.5 466 55.2
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.3e-129 466.1 486 54.1
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 3.3e-129 466.1 486 54.1
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.3e-129 465.7 493 57.0
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 4.3e-129 465.7 479 54.7
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.1e-128 463.4 462 54.5
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.1e-128 463.4 485 53.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.1e-127 461.1 471 55.2
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.3e-127 459.9 448 56.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 6.8e-127 458.4 459 53.4
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 6.8e-127 458.4 484 53.1
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.2e-126 457.6 463 53.8
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-126 456.4 465 53.1
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.6e-126 456.4 453 53.6
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 3.4e-126 456.1 459 55.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.4e-126 456.1 434 54.1
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.8e-126 455.3 459 53.4
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.9e-126 454.5 453 53.6
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.3e-125 454.1 448 54.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.2e-125 453.4 447 54.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.9e-125 452.2 444 54.7
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.4e-124 450.7 465 52.5
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.2e-124 449.5 458 52.0
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 5.4e-124 448.7 473 55.4
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.2e-123 447.6 486 54.3
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 3.5e-123 446.0 486 54.3
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.6e-123 445.7 460 52.8
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 7.8e-123 444.9 462 52.2
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.0e-122 444.5 453 51.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.3e-122 443.4 487 50.7
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 3.0e-122 443.0 458 54.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 8.6e-122 441.4 487 50.9
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.5e-121 440.7 485 53.6
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 3.3e-121 439.5 481 53.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 5.6e-121 438.7 442 53.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 7.3e-121 438.3 446 52.9
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 9.5e-121 438.0 460 51.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.6e-120 436.0 498 52.2
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 6.2e-120 435.3 452 56.2
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 8.1e-120 434.9 452 52.9
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.4e-119 434.1 448 53.8
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-119 433.7 479 49.9
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.0e-118 430.3 490 50.6
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.6e-118 429.9 490 52.4
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.4e-118 429.5 494 50.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.8e-118 428.7 423 59.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 7.6e-118 428.3 460 51.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.3e-117 427.6 498 49.4
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-117 427.2 518 47.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.7e-117 427.2 476 51.9
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.8e-117 426.0 512 48.0
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.8e-117 426.0 484 50.4
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.8e-117 426.0 462 50.2
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 4.9e-117 425.6 453 54.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 4.9e-117 425.6 487 48.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 6.4e-117 425.2 406 54.9
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.1e-116 424.5 503 48.7
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.1e-116 424.5 448 55.1
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.2e-116 422.9 473 49.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 5.4e-116 422.2 461 51.0
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 5.4e-116 422.2 436 55.0
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.2e-116 421.4 464 50.2
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.5e-115 419.5 460 51.7
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 3.5e-115 419.5 494 50.2
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.5e-115 419.5 476 52.5
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.0e-114 417.9 444 51.1
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 6.6e-114 415.2 483 51.8
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 6.6e-114 415.2 463 49.5
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.1e-113 414.5 470 48.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.9e-113 413.7 483 49.9
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-113 413.3 443 54.9
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 9.6e-113 411.4 444 52.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.1e-112 410.2 460 50.2
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-112 409.8 473 49.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.6e-112 409.5 443 53.3
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.6e-112 409.5 467 50.1
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 4.7e-112 409.1 484 52.5
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 8.1e-112 408.3 443 53.0
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.1e-111 407.9 454 50.9
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.4e-111 407.5 482 49.2
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.8e-111 407.1 482 49.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.0e-110 403.7 494 47.2
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 5.8e-110 402.1 448 50.9
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 7.6e-110 401.7 427 52.9
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.9e-109 399.8 443 51.5
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 7.1e-108 395.2 574 43.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.6e-107 394.0 386 53.4
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 6.0e-107 392.1 485 47.8
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.0e-106 391.3 449 52.3
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.3e-106 390.2 425 54.4
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 6.6e-106 388.7 443 51.5
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.5e-105 387.5 426 56.1
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.5e-105 387.5 536 45.0
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.9e-105 387.1 484 49.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.3e-105 386.3 472 47.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.3e-105 386.0 470 50.2
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.3e-104 384.4 480 49.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 2.8e-104 383.3 457 51.0
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.9e-103 378.6 461 47.7
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 4.5e-102 375.9 519 44.1
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 3.8e-101 372.9 480 49.0
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.1e-100 371.3 409 49.6
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.6e-97 359.0 486 45.7
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-96 356.7 510 42.7
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.7e-96 356.3 510 42.7
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 6.9e-95 352.1 486 44.2
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 9.0e-95 351.7 447 44.7
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 3.8e-93 346.3 452 46.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 8.7e-90 335.1 444 47.1
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-85 321.2 452 46.0
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 9.3e-84 315.1 441 43.5
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 4.6e-83 312.8 395 50.9
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.0e-82 311.6 217 65.9
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.7e-81 305.8 369 52.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.4e-79 301.2 397 42.3
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 3.1e-79 300.1 217 64.1
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.0e-79 298.5 316 48.4
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-78 297.4 460 41.3
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.5e-78 296.2 502 39.8
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 8.5e-77 292.0 223 61.9
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.3e-74 283.9 313 49.5
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.7e-74 282.3 462 41.3
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 3.3e-73 280.0 463 37.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 3.7e-72 276.6 316 44.9
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 2.8e-64 250.4 454 39.0
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.7e-61 241.1 328 45.4
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.6e-59 234.6 175 63.4
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.2e-46 191.8 136 67.6
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 8.0e-43 179.1 247 38.9
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.6e-41 174.1 157 56.1
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-36 158.3 310 39.0
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 9.5e-36 155.6 218 44.0
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.2e-32 144.4 199 37.2
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.1e-31 140.6 94 67.0
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.7e-30 137.5 190 35.8
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 9.2e-23 112.5 225 37.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.3e-21 108.6 77 67.5
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 5.0e-21 106.7 227 41.9
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.2e-19 99.8 72 59.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 7.3e-12 76.3 98 48.0
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 4.4e-09 67.0 61 50.8
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.7e-08 65.1 105 44.8
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 3.2e-07 60.8 66 47.0
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.4e-07 60.1 63 60.3
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 2.7e-06 57.8 44 56.8
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 7.8e-06 56.2 51 51.0


User provided reference genes

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