Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb111460 Zea mays HOM05D001101 ORTHO05D000893 5.7e-42 173.7 80 100.0
Zm00001eb302130 Zea mays HOM05D001101 ORTHO05D000893 5.7e-42 173.7 80 100.0
Zm00001eb189950 Zea mays HOM05D001101 ORTHO05D000893 7.5e-10 67.0 37 86.5
CDE05G2472 Ceratophyllum demersum HOM05D001101 ORTHO05D000893 8.2e-09 63.5 37 78.4
Os02g0730400 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 8.2e-09 63.5 37 81.1
CDE05G2845 Ceratophyllum demersum HOM05D001101 ORTHO05D000893 1.8e-08 62.4 37 78.4
THA.LOC104808927 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 4.1e-08 61.2 37 73.0
Hma1.2p1_0867F.1_g230370 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 5.3e-08 60.8 38 81.6
unitig_746.g26570 Utricularia gibba HOM05D001101 ORTHO05D000893 5.3e-08 60.8 37 75.7
HanXRQChr12g0371421 Helianthus annuus HOM05D001101 ORTHO05D000893 9.1e-08 60.1 38 78.9
Oeu027460.1 Olea europaea HOM05D001101 ORTHO05D000893 9.1e-08 60.1 48 66.7
HPP92_019253 Vanilla planifolia HOM05D001101 ORTHO05D000893 9.1e-08 60.1 37 75.7
HPP92_019255 Vanilla planifolia HOM05D001101 ORTHO05D000893 9.1e-08 60.1 37 75.7
EL10Ac6g13649 Beta vulgaris HOM05D001101 ORTHO05D000893 1.2e-07 59.7 62 56.5
AUR62014004 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.2e-07 59.7 38 78.9
TPR.G29174 Trifolium pratense HOM05D001101 ORTHO05D000893 1.2e-07 59.7 39 76.9
Dinv31019 Davidia involucrata HOM05D001101 ORTHO05D000893 1.6e-07 59.3 38 81.6
Dinv31083 Davidia involucrata HOM05D001101 ORTHO05D000893 1.6e-07 59.3 38 81.6
HanXRQChr08g0208881 Helianthus annuus HOM05D001101 ORTHO05D000893 1.6e-07 59.3 60 58.3
unitig_699.g19931 Utricularia gibba HOM05D001101 ORTHO05D000893 1.6e-07 59.3 72 48.6
MD16G1089700 Malus domestica HOM05D001101 ORTHO05D000893 2.0e-07 58.9 38 78.9
Oeu025436.1 Olea europaea HOM05D001101 ORTHO05D000893 2.0e-07 58.9 38 78.9
RcHm_v2.0_Chr4g0444151 Rosa chinensis HOM05D001101 ORTHO05D000893 2.0e-07 58.9 54 63.0
BcaB02g09681 Brassica carinata HOM05D001101 ORTHO05D000893 2.7e-07 58.5 38 76.3
Os06g0269300 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 2.7e-07 58.5 37 73.0
Hund05975 Selenicereus undatus HOM05D001101 ORTHO05D000893 2.7e-07 58.5 37 75.7
GSVIVG01020207001 Vitis vinifera HOM05D001101 ORTHO05D000893 2.7e-07 58.5 38 78.9
Zm00001eb280410 Zea mays HOM05D001101 ORTHO05D000893 2.7e-07 58.5 37 73.0
Actinidia15030 Actinidia chinensis HOM05D001101 ORTHO05D000893 3.5e-07 58.2 38 78.9
MSTRG.7883 Avicennia marina HOM05D001101 ORTHO05D000893 3.5e-07 58.2 38 76.3
Ca_04608_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 3.5e-07 58.2 39 74.4
Dinv24882 Davidia involucrata HOM05D001101 ORTHO05D000893 3.5e-07 58.2 38 78.9
FAN07G0661 Fragaria x ananassa HOM05D000380 ORTHO05D000561 3.5e-07 58.2 38 76.3
FAN12G2904 Fragaria x ananassa HOM05D001101 ORTHO05D000893 3.5e-07 58.2 38 76.3
FAN22G1364 Fragaria x ananassa HOM05D001101 ORTHO05D000893 3.5e-07 58.2 38 76.3
GSVIVG01032504001 Vitis vinifera HOM05D001101 ORTHO05D000893 3.5e-07 58.2 38 78.9
CSS0035328 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 4.5e-07 57.8 38 76.3
CSS0045296 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 4.5e-07 57.8 38 76.3
Manes.05G088000 Manihot esculenta HOM05D001101 ORTHO05D000893 4.5e-07 57.8 38 78.9
Nn4g22832 Nelumbo nucifera HOM05D001101 ORTHO05D000893 4.5e-07 57.8 38 76.3
AUR62005351 Chenopodium quinoa HOM05D001101 ORTHO05D000893 5.9e-07 57.4 38 78.9
AUR62038813 Chenopodium quinoa HOM05D001101 ORTHO05D000893 5.9e-07 57.4 37 78.4
Medtr5g034750 Medicago truncatula HOM05D001101 ORTHO05D000893 5.9e-07 57.4 39 74.4
Psat2g105520 Pisum sativum HOM05D001101 ORTHO05D000893 5.9e-07 57.4 39 74.4
Potri.010G094200 Populus trichocarpa HOM05D001101 ORTHO05D000893 5.9e-07 57.4 37 75.7
PGR119G1830 Punica granatum HOM05D001101 ORTHO05D000893 5.9e-07 57.4 60 55.0
QL02p077025 Quercus lobata HOM05D001101 ORTHO05D000893 5.9e-07 57.4 39 74.4
Sabra10G0066400 Salix brachista HOM05D001101 ORTHO05D000893 5.9e-07 57.4 37 75.7
Sp5g25390 Schrenkiella parvula HOM05D001101 ORTHO05D000893 5.9e-07 57.4 38 76.3
Ah.03g132590 Amaranthus hybridus HOM05D001101 ORTHO05D000893 7.7e-07 57.0 39 71.8
BcaB03g15541 Brassica carinata HOM05D001101 ORTHO05D000893 7.7e-07 57.0 38 73.7
Glyma.01G032000 Glycine max HOM05D001101 ORTHO05D000893 7.7e-07 57.0 39 74.4
Glyma.02G033400 Glycine max HOM05D001101 ORTHO05D000893 7.7e-07 57.0 39 74.4
Lalb_Chr16g0382351 Lupinus albus HOM05D001101 ORTHO05D000893 7.7e-07 57.0 38 76.3
MBI14_g17549_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 7.7e-07 57.0 38 78.9
Phvul.002G072500 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 7.7e-07 57.0 39 74.4
Sc11g0001270 Simmondsia chinensis HOM05D001101 ORTHO05D000893 7.7e-07 57.0 38 78.9
THA.LOC104822133 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 7.7e-07 57.0 37 75.7
VMungo1215G1219 Vigna mungo HOM05D001101 ORTHO05D000893 7.7e-07 57.0 39 74.4
BcaB03g14787 Brassica carinata HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
BcaC08g45822 Brassica carinata HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
BcaC08g46472 Brassica carinata HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
A07p31110 Brassica napus HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
A07p36700 Brassica napus HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
C06p44110 Brassica napus HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
BolC6t38734H Brassica oleracea HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
BolC6t39484H Brassica oleracea HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
BraA07t30746Z Brassica rapa HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
BraA07t31238Z Brassica rapa HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 73.7
CSS0032434 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 76.3
Cc11_g14460 Coffea canephora HOM05D001101 ORTHO05D000893 1.0e-06 56.6 39 69.2
Glyma.19G011000 Glycine max HOM05D001101 ORTHO05D000893 1.0e-06 56.6 48 64.6
MD13G1089500 Malus domestica HOM05D001101 ORTHO05D000893 1.0e-06 56.6 38 76.3
CANSAT01G0962 Cannabis sativa HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
Cfa009111 Carpinus fangiana HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
CiPaw.05G147400 Carya illinoinensis HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
Dinv33507 Davidia involucrata HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
Dinv35044 Davidia involucrata HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
FvH4_4g34810 Fragaria vesca HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 73.7
FvH4_6g50490 Fragaria vesca HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
FAN02G1158 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
FAN14G3585 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
Lalb_Chr16g0392451 Lupinus albus HOM05D001101 ORTHO05D000893 1.3e-06 56.2 60 55.0
Phvul.004G018200 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 1.3e-06 56.2 48 64.6
Prupe.3G281800 Prunus persica HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
RcHm_v2.0_Chr2g0170891 Rosa chinensis HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
TWI75G0662 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 1.3e-06 56.2 38 76.3
VMungo0464G2188 Vigna mungo HOM05D001101 ORTHO05D000893 1.3e-06 56.2 48 64.6
AL2G29580 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 73.7
AT1G70280 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 73.7
Carub.0002s1696 Capsella rubella HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 73.7
CARHR063400 Cardamine hirsuta HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 73.7
Haze_12149 Corylus avellana HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 76.3
Hma1.2p1_0160F.1_g070690 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 1.7e-06 55.8 37 78.4
Lj6C803T14 Lonicera japonica HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 73.7
MD09G1036000 Malus domestica HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 73.7
Rhsim12G0122000 Rhododendron simsii HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 76.3
SEGI_12056 Sequoiadendron giganteum HOM05D001101 ORTHO05D000893 1.7e-06 55.8 37 64.9
vmacro16266 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 1.7e-06 55.8 38 76.3
Aa31LG4G10650 Aethionema arabicum HOM05D001101 ORTHO05D000893 2.2e-06 55.5 38 73.7
A09p40960 Brassica napus HOM05D001101 ORTHO05D000893 2.2e-06 55.5 39 71.8
BraA09t39585Z Brassica rapa HOM05D001101 ORTHO05D000893 2.2e-06 55.5 39 71.8
ClCG10G014400 Citrullus lanatus HOM05D001101 ORTHO05D000893 2.2e-06 55.5 37 67.6
COL.COLO4_19521 Corchorus olitorius HOM05D001101 ORTHO05D000893 2.2e-06 55.5 38 73.7
Eucgr.B03951 Eucalyptus grandis HOM05D001101 ORTHO05D000893 2.2e-06 55.5 39 71.8
Lalb_Chr09g0335061 Lupinus albus HOM05D001101 ORTHO05D000893 2.2e-06 55.5 60 55.0
Potri.008G147700 Populus trichocarpa HOM05D001101 ORTHO05D000893 2.2e-06 55.5 37 73.0
QL03p061860 Quercus lobata HOM05D001101 ORTHO05D000893 2.2e-06 55.5 38 73.7
Sabra08G0112300 Salix brachista HOM05D001101 ORTHO05D000893 2.2e-06 55.5 37 73.0
Hund25336 Selenicereus undatus HOM05D001101 ORTHO05D000893 2.2e-06 55.5 39 71.8
TAR371G0907 Trochodendron aralioides HOM05D001101 ORTHO05D000893 2.2e-06 55.5 38 76.3
Cpa.g.sc69.6 Carica papaya HOM05D001101 ORTHO05D000893 2.9e-06 55.1 38 76.3
Duzib268G0494 Durio zibethinus HOM05D001101 ORTHO05D000893 2.9e-06 55.1 38 71.1
Thhalv10007420m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 2.9e-06 55.1 38 73.7
Glyma.08G288800 Glycine max HOM05D001101 ORTHO05D000893 2.9e-06 55.1 39 71.8
Gohir.A05G318200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 2.9e-06 55.1 38 73.7
Lj2g0009470 Lotus japonicus HOM05D001101 ORTHO05D000893 2.9e-06 55.1 39 71.8
Manes.01G198700 Manihot esculenta HOM05D001101 ORTHO05D000893 2.9e-06 55.1 38 76.3
Medtr8g063760 Medicago truncatula HOM05D001101 ORTHO05D000893 2.9e-06 55.1 39 71.8
Phvul.003G053100 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 2.9e-06 55.1 39 71.8
Psat4g125040 Pisum sativum HOM05D001101 ORTHO05D000893 2.9e-06 55.1 39 71.8
Prupe.1G256300 Prunus persica HOM05D001101 ORTHO05D000893 2.9e-06 55.1 38 73.7
TPR.G21867 Trifolium pratense HOM05D001101 ORTHO05D000893 2.9e-06 55.1 39 71.8
VMungo0251G1292 Vigna mungo HOM05D001101 ORTHO05D000893 2.9e-06 55.1 39 71.8
AT1G23880 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 3.8e-06 54.7 38 73.7
Carub.0001s2337 Capsella rubella HOM05D001101 ORTHO05D000893 3.8e-06 54.7 38 73.7
CAN.G205.8 Capsicum annuum HOM05D001101 ORTHO05D000893 3.8e-06 54.7 39 69.2
Gohir.D05G320500 Gossypium hirsutum HOM05D001101 ORTHO05D000893 3.8e-06 54.7 38 71.1
Gorai.009G343600 Gossypium raimondii HOM05D001101 ORTHO05D000893 3.8e-06 54.7 38 71.1
Lsat_1_v5_gn_8_159121 Lactuca sativa HOM05D001101 ORTHO05D000893 3.8e-06 54.7 61 57.4
Lj4g0015491 Lotus japonicus HOM05D001101 ORTHO05D000893 3.8e-06 54.7 39 69.2
SHI24753 Sapria himalayana HOM05D001101 ORTHO05D000893 3.8e-06 54.7 36 72.2
SGA_v2.0_scaffold135G34853 Striga asiatica HOM05D001101 ORTHO05D000893 3.8e-06 54.7 39 71.8
Atru.chr11.1998 Acer truncatum HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 73.7
Aqoxy3G03038 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 68.4
C05p23070 Brassica napus HOM05D001101 ORTHO05D000893 5.0e-06 54.3 39 71.8
CsaV3_3G042190 Cucumis sativus L. HOM05D001101 ORTHO05D000893 5.0e-06 54.3 37 64.9
Eucgr.J02182 Eucalyptus grandis HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 65.8
Lalb_Chr09g0326421 Lupinus albus HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 73.7
Nitab4.5_0000052g0370 Nicotiana tabacum HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 71.1
Nitab4.5_0008887g0010 Nicotiana tabacum HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 71.1
PSO832G3645 Papaver somniferum HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 71.1
Peaxi162Scf00421g00121 Petunia axillaris HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 71.1
PGR083G2325 Punica granatum HOM05D001101 ORTHO05D000893 5.0e-06 54.3 38 68.4
Sed0023173 Sechium edule HOM05D001101 ORTHO05D000893 5.0e-06 54.3 37 67.6
CiPaw.06G073800 Carya illinoinensis HOM05D001101 ORTHO05D000893 6.5e-06 53.9 60 53.3
DCAR_026546 Daucus carota HOM05D001101 ORTHO05D000893 6.5e-06 53.9 54 57.4
Duzib251G0525 Durio zibethinus HOM05D001101 ORTHO05D000893 6.5e-06 53.9 54 57.4
Migut.L01428 Erythranthe guttata HOM05D001101 ORTHO05D000893 6.5e-06 53.9 39 74.4
Thhalv10018442m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 71.1
FAN05G2631 Fragaria x ananassa HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 73.7
FAN05G4804 Fragaria x ananassa HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 73.7
FAN09G1428 Fragaria x ananassa HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 73.7
Lalb_Chr05g0217011 Lupinus albus HOM05D001101 ORTHO05D000893 6.5e-06 53.9 39 69.2
Nitab4.5_0001952g0060 Nicotiana tabacum HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 68.4
Nitab4.5_0007879g0050 Nicotiana tabacum HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 68.4
PSO063G2075 Papaver somniferum HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 68.4
SGA_v2.0_scaffold165G38262 Striga asiatica HOM05D001101 ORTHO05D000893 6.5e-06 53.9 39 74.4
Thecc.02G246000 Theobroma cacao HOM05D001101 ORTHO05D000893 6.5e-06 53.9 38 73.7
Zm00001eb253510 Zea mays HOM05D001101 ORTHO05D000893 6.5e-06 53.9 28 85.7
Aa31LG7G7740 Aethionema arabicum HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 71.1
ATR1149G122 Amborella trichopoda HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 71.1
arahy.Tifrunner.gnm1.ann1.94JZA8 Arachis hypogaea HOM05D001101 ORTHO05D000893 8.5e-06 53.5 39 71.8
arahy.Tifrunner.gnm1.ann1.GMM3UD Arachis hypogaea HOM05D001101 ORTHO05D000893 8.5e-06 53.5 39 71.8
MSTRG.24001 Avicennia marina HOM05D001101 ORTHO05D000893 8.5e-06 53.5 54 57.4
C06p36160 Brassica napus HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 71.1
BolC5t31005H Brassica oleracea HOM05D001101 ORTHO05D000893 8.5e-06 53.5 39 69.2
CANSAT64G2323 Cannabis sativa HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 71.1
Ciclev10014971m.g Citrus clementina HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 71.1
Haze_14655 Corylus avellana HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 68.4
MELO3C009940.2 Cucumis melo HOM05D001101 ORTHO05D000893 8.5e-06 53.5 37 64.9
Gohir.A04G134900 Gossypium hirsutum HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 71.1
SalBow1G0277 Salvia bowleyana HOM05D001101 ORTHO05D000893 8.5e-06 53.5 39 66.7
SalBow2G3253 Salvia bowleyana HOM05D001101 ORTHO05D000893 8.5e-06 53.5 38 71.1


User provided reference genes

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