Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 100.0
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 100.0
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 88.9
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.9e-118 429.5 261 81.2
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.9e-118 429.5 261 81.2
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.2e-118 428.3 261 81.6
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 4.2e-118 428.3 261 80.8
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 5.4e-118 427.9 261 80.8
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 5.4e-118 427.9 261 80.8
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 9.3e-118 427.2 261 80.5
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 9.3e-118 427.2 260 81.2
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.2e-117 426.8 261 80.8
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.6e-117 426.4 260 81.2
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.6e-117 426.4 260 81.2
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 3.5e-117 425.2 259 81.5
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 3.5e-117 425.2 259 81.5
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.5e-117 425.2 261 81.2
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.5e-117 425.2 261 81.6
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 3.5e-117 425.2 261 81.6
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.6e-117 424.9 261 81.6
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 4.6e-117 424.9 261 80.8
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 6.0e-117 424.5 261 80.5
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 6.0e-117 424.5 260 80.8
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 7.8e-117 424.1 261 82.4
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 7.8e-117 424.1 260 81.5
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 7.8e-117 424.1 261 81.6
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 7.8e-117 424.1 261 80.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.0e-116 423.7 261 81.2
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.0e-116 423.7 261 80.5
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.7e-116 422.9 261 80.8
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 3.0e-116 422.2 261 80.8
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.0e-116 422.2 261 79.7
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.0e-116 422.2 261 80.1
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 3.9e-116 421.8 261 81.2
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 3.9e-116 421.8 261 80.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 3.9e-116 421.8 261 80.1
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 3.9e-116 421.8 261 80.5
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 3.9e-116 421.8 260 80.8
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 5.1e-116 421.4 261 80.5
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 5.1e-116 421.4 261 80.5
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.1e-116 421.4 261 79.7
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 5.1e-116 421.4 261 80.8
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 6.6e-116 421.0 260 81.5
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 8.7e-116 420.6 261 80.8
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.1
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.1
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.8
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.8
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.1
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.1
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.5
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.5
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.1
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.5e-115 419.9 261 80.1
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.5e-115 419.9 261 79.3
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.5e-115 419.9 264 80.3
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.5e-115 419.9 261 80.8
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.5e-115 419.9 261 80.8
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.9e-115 419.5 261 80.1
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.9e-115 419.5 261 80.5
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.9e-115 419.5 261 80.5
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.9e-115 419.5 261 79.3
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.5e-115 419.1 261 79.7
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 2.5e-115 419.1 261 79.7
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 2.5e-115 419.1 261 80.1
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 3.3e-115 418.7 258 81.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.3e-115 418.7 261 80.1
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.3e-115 418.7 261 79.7
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.3e-115 418.3 261 80.5
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.3e-115 418.3 261 80.1
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 4.3e-115 418.3 261 80.5
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 4.3e-115 418.3 261 80.1
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 4.3e-115 418.3 265 78.9
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 5.6e-115 417.9 261 80.1
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 5.6e-115 417.9 261 80.1
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 7.3e-115 417.5 260 79.6
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 9.6e-115 417.2 261 80.5
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 9.6e-115 417.2 261 80.1
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 9.6e-115 417.2 261 79.7
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 9.6e-115 417.2 256 81.6
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.3e-114 416.8 261 79.7
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.3e-114 416.8 260 79.6
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.3e-114 416.8 261 79.3
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.3e-114 416.8 261 79.3
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.3e-114 416.8 261 79.7
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 78.2
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 80.5
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 80.5
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 79.3
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 78.9
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 2.1e-114 416.0 261 79.3
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.1e-114 416.0 261 79.3
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.1e-114 416.0 261 79.3
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 2.1e-114 416.0 261 80.1
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 3.6e-114 415.2 261 79.7
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 3.6e-114 415.2 261 79.3
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 4.8e-114 414.8 261 79.3
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.8e-114 414.8 261 79.7
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 6.2e-114 414.5 261 79.3
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 6.2e-114 414.5 261 79.3
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 8.1e-114 414.1 261 79.3
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 8.1e-114 414.1 261 80.1
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 2.4e-113 412.5 261 77.8
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.4e-113 412.5 261 78.9
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.4e-113 412.5 261 78.5
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.1e-113 412.1 261 78.9
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.1e-113 412.1 261 79.3
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 3.1e-113 412.1 261 78.2
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 5.3e-113 411.4 260 79.2
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.5
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.5
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.5
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.2
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.2e-112 410.2 261 78.2
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 1.2e-112 410.2 261 78.2
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.0e-112 409.5 261 77.4
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 4.4e-112 408.3 261 77.8
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 7.6e-112 407.5 261 77.0
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 7.6e-112 407.5 261 78.5
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.7e-111 406.4 261 77.8
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.7e-111 406.4 259 78.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.7e-111 406.4 261 77.4
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.2e-111 406.0 261 78.2
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.9e-111 405.6 256 78.1
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 2.9e-111 405.6 269 76.6
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 4.9e-111 404.8 261 77.4
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 1.1e-110 403.7 285 72.6
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 4.2e-110 401.7 276 75.4
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 4.6e-109 398.3 261 75.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.3e-107 391.7 277 72.9
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 1.1e-105 387.1 261 70.9
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.8e-105 386.3 261 73.2
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.0e-105 385.2 240 80.4
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 9.0e-105 384.0 212 88.2
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 3.4e-104 382.1 261 74.7
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.2e-103 379.4 261 71.3
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-100 369.8 241 76.8
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.1e-100 368.2 241 76.3
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 6.7e-100 367.9 201 88.1
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.7e-98 362.1 263 70.7
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.4e-96 355.5 261 70.9
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 4.5e-96 355.1 195 87.2
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.8e-95 352.1 261 70.5
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.3e-92 343.6 198 85.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.9e-92 342.0 309 61.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 3.9e-92 342.0 222 77.0
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 3.3e-91 339.0 240 71.7
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 4.8e-90 335.1 249 69.1
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.8e-90 335.1 261 67.4
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 4.1e-89 332.0 256 68.8
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-87 327.0 337 54.6
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.9e-87 325.9 260 61.2
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.7e-83 311.6 177 84.7
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 5.3e-81 305.1 161 90.7
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 3.6e-69 265.8 219 61.6
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.0e-67 260.0 240 61.2
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.5e-56 222.6 113 92.9
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.0e-48 196.8 98 93.9
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.7e-48 196.4 143 69.9
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.7e-47 193.7 142 69.7
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.4e-43 179.1 135 70.4
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 7.7e-40 168.3 108 76.9
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 4.3e-38 162.5 108 75.0
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.8e-37 159.8 196 49.0
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.8e-36 157.1 135 60.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.8e-36 157.1 92 82.6
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.5e-35 154.1 271 42.1
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 4.9e-34 149.1 197 47.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 5.4e-25 119.0 92 64.1
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 2.0e-24 117.1 83 73.5
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.6e-24 115.9 99 64.6
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.7e-21 105.9 111 56.8
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 3.4e-11 73.2 81 54.3
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 42 78.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 7.8e-08 62.0 59 54.2
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 3.9e-07 59.7 64 50.0


User provided reference genes

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