Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb110220 Zea mays HOM05D003560 ORTHO05D004500 7.0e-71 270.8 165 100.0
Zm00001eb257740 Zea mays HOM05D003560 ORTHO05D004500 1.5e-68 263.1 164 98.2
Zm00001eb206680 Zea mays HOM05D003560 ORTHO05D004500 4.4e-65 251.5 135 97.8
Zm00001eb234440 Zea mays HOM05D003560 ORTHO05D004500 2.4e-63 245.7 134 96.3
Zm00001eb233940 Zea mays HOM05D003560 ORTHO05D004500 3.3e-60 235.3 135 91.9
Os02g0179800 Oryza sativa ssp. japonica HOM05D003560 ORTHO05D004500 1.0e-45 187.2 135 77.0
Zm00001eb400070 Zea mays HOM05D003560 ORTHO05D004500 9.9e-41 170.6 93 94.6
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 3.1e-34 149.1 135 57.0
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 8.9e-34 147.5 135 58.5
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 8.9e-34 147.5 135 58.5
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 1.2e-33 147.1 135 54.8
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 1.5e-33 146.7 136 57.4
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 2.0e-33 146.4 136 57.4
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 2.6e-33 146.0 136 58.1
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 2.6e-33 146.0 136 57.4
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 2.6e-33 146.0 136 57.4
AUR62025371 Chenopodium quinoa HOM05D003560 ORTHO05D004500 3.4e-33 145.6 136 56.6
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 3.4e-33 145.6 135 54.1
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 4.4e-33 145.2 136 57.4
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 4.4e-33 145.2 135 53.3
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 7.6e-33 144.4 136 55.1
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 7.6e-33 144.4 135 54.1
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 9.9e-33 144.1 135 54.8
Hma1.2p1_0222F.1_g093900 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 9.9e-33 144.1 135 54.8
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 9.9e-33 144.1 135 54.8
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 1.3e-32 143.7 136 55.9
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.3e-32 143.7 136 57.4
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 1.7e-32 143.3 135 54.1
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.7e-32 143.3 136 58.1
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 3.8e-32 142.1 136 55.9
GSVIVG01023682001 Vitis vinifera HOM05D003560 ORTHO05D004500 3.8e-32 142.1 136 57.4
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 6.4e-32 141.4 135 52.6
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 6.4e-32 141.4 136 58.8
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 6.4e-32 141.4 136 54.4
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 8.4e-32 141.0 136 54.4
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 8.4e-32 141.0 135 52.6
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 8.4e-32 141.0 135 52.6
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 1.1e-31 140.6 136 55.9
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.1e-31 140.6 135 51.9
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 1.4e-31 140.2 134 58.2
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 1.4e-31 140.2 135 53.3
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 2.4e-31 139.4 136 55.1
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.4e-31 139.4 135 51.9
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 4.2e-31 138.7 136 53.7
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 4.2e-31 138.7 135 53.3
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 5.4e-31 138.3 135 51.9
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 7.1e-31 137.9 135 52.6
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 7.1e-31 137.9 135 54.1
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 9.3e-31 137.5 136 53.7
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 9.3e-31 137.5 136 53.7
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 1.2e-30 137.1 136 53.7
unitig_37.g12751 Utricularia gibba HOM05D003560 ORTHO05D004500 1.2e-30 137.1 135 54.1
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 1.6e-30 136.7 136 52.2
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 3.5e-30 135.6 136 52.2
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 3.5e-30 135.6 136 52.2
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 3.5e-30 135.6 135 51.9
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 4.6e-30 135.2 135 53.3
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 4.6e-30 135.2 137 54.7
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 4.6e-30 135.2 136 52.9
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 7.8e-30 134.4 136 52.2
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 7.8e-30 134.4 135 51.1
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 7.8e-30 134.4 135 53.3
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 1.3e-29 133.7 137 51.8
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 1.7e-29 133.3 135 51.9
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 3.0e-29 132.5 136 52.2
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 3.0e-29 132.5 136 54.4
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 3.0e-29 132.5 135 50.4
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 3.0e-29 132.5 135 50.4
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 3.0e-29 132.5 137 54.0
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 3.0e-29 132.5 135 52.6
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 3.0e-29 132.5 135 50.4
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 3.9e-29 132.1 135 49.6
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 5.1e-29 131.7 136 52.2
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 5.1e-29 131.7 135 49.6
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 5.1e-29 131.7 136 51.5
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 8.7e-29 131.0 135 53.3
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 8.7e-29 131.0 136 51.5
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 8.7e-29 131.0 135 50.4
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 1.1e-28 130.6 136 52.2
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 1.1e-28 130.6 135 51.9
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 3.3e-28 129.0 136 52.2
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 4.3e-28 128.6 136 51.5
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 4.3e-28 128.6 135 50.4
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 5.6e-28 128.3 136 50.7
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 5.6e-28 128.3 136 54.4
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 1.3e-27 127.1 136 51.5
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 1.6e-27 126.7 136 51.5
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 1.6e-27 126.7 135 51.9
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 2.1e-27 126.3 135 50.4
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 2.8e-27 125.9 136 50.0
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 4.8e-27 125.2 136 52.2
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 4.8e-27 125.2 136 52.2
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 4.8e-27 125.2 136 48.5
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 4.8e-27 125.2 136 48.5
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 8.1e-27 124.4 136 50.0
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 8.1e-27 124.4 136 50.0
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 8.1e-27 124.4 136 50.0
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 8.1e-27 124.4 136 52.9
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 1.1e-26 124.0 136 50.7
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 1.1e-26 124.0 136 52.2
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 1.1e-26 124.0 136 49.3
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 1.4e-26 123.6 136 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4294 Anthoceros agrestis HOM05D003560 ORTHO05D004500 1.8e-26 123.2 136 49.3
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 1.8e-26 123.2 136 51.5
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 1.8e-26 123.2 136 51.5
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 1.8e-26 123.2 136 50.7
THA.LOC104803909 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 1.8e-26 123.2 137 51.1
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 2.4e-26 122.9 136 48.5
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 2.4e-26 122.9 136 49.3
A01p07380 Brassica napus HOM05D003560 ORTHO05D004500 3.1e-26 122.5 136 50.7
BraA01t00687Z Brassica rapa HOM05D003560 ORTHO05D004500 3.1e-26 122.5 136 50.7
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 3.1e-26 122.5 136 49.3
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 4.0e-26 122.1 136 49.3
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 5.3e-26 121.7 136 50.7
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 5.3e-26 121.7 136 49.3
BcaC09g51868 Brassica carinata HOM05D003560 ORTHO05D004500 6.9e-26 121.3 136 50.0
C01p08140 Brassica napus HOM05D003560 ORTHO05D004500 6.9e-26 121.3 136 50.0
BolC1t00801H Brassica oleracea HOM05D003560 ORTHO05D004500 6.9e-26 121.3 136 50.0
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 6.9e-26 121.3 136 47.8
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 6.9e-26 121.3 136 48.5
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 2.0e-25 119.8 136 48.5
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 2.0e-25 119.8 136 48.5
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 2.0e-25 119.8 136 48.5
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 2.0e-25 119.8 136 48.5
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 2.6e-25 119.4 136 50.0
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 4.5e-25 118.6 136 50.0
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 4.5e-25 118.6 135 51.9
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 5.8e-25 118.2 136 47.8
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 5.8e-25 118.2 137 49.6
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 7.6e-25 117.9 138 47.1
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 1.3e-24 117.1 122 50.8
HanXRQChr05g0141571 Helianthus annuus HOM05D003560 ORTHO05D004500 1.3e-24 117.1 135 46.7
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 1.7e-24 116.7 136 47.1
Ah.14g084380 Amaranthus hybridus HOM05D003560 ORTHO05D004500 3.8e-24 115.5 136 48.5
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 3.8e-24 115.5 136 47.1
ECA236G1776 Erigeron canadensis HOM05D003560 ORTHO05D004500 6.4e-24 114.8 135 47.4
Pp3c22_15890 Physcomitrium patens HOM05D003560 ORTHO05D004500 8.4e-24 114.4 137 48.2
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 8.4e-24 114.4 136 47.1
CDE05G3326 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 1.4e-23 113.6 136 52.2
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 1.9e-23 113.2 136 50.0
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 1.9e-23 113.2 136 47.1
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 1.9e-23 113.2 136 47.8
SMO301G0012 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 4.6e-22 108.6 141 44.7
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 7.9e-22 107.8 136 48.5
Mapoly0041s0089 Marchantia polymorpha HOM05D003560 ORTHO05D004500 1.0e-21 107.5 135 49.6
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 2.3e-21 106.3 136 48.5
SMO361G0185 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 1.5e-20 103.6 137 45.3
SMO361G0456 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 1.5e-20 103.6 137 45.3
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 1.9e-20 103.2 135 43.7
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 1.9e-20 103.2 136 46.3
vmacro06070 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 1.1e-15 87.4 135 40.7
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 1.9e-15 86.7 135 40.0
RcHm_v2.0_Chr5g0033091 Rosa chinensis HOM05D003560 ORTHO05D004500 5.1e-13 78.6 66 60.6
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 5.1e-13 78.6 135 37.0
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 3.3e-12 75.9 69 58.0
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 1.6e-11 73.6 101 45.5
CBR_g38482 Chara braunii HOM05D003560 ORTHO05D004500 2.2e-08 63.2 106 41.5
CBR_g55388 Chara braunii HOM05D003560 ORTHO05D004500 3.2e-07 59.3 99 41.4


User provided reference genes

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