Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 4.3e-237 824.3 428 100.0
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 1.8e-179 632.9 375 88.8
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 3.6e-159 565.5 428 70.8
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 2.4e-102 376.7 407 51.6
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 2.4e-102 376.7 407 53.1
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 6.8e-102 375.2 406 51.7
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 1.5e-101 374.0 410 52.0
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.4e-101 372.9 412 51.0
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 5.8e-101 372.1 412 51.0
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 7.6e-101 371.7 408 51.5
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 7.6e-101 371.7 408 51.7
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.3e-100 370.9 405 52.6
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 2.2e-100 370.2 410 52.2
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 3.8e-100 369.4 405 50.6
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 8.4e-100 368.2 412 50.7
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 4.2e-99 365.9 409 50.9
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 7.1e-99 365.2 397 50.4
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 1.6e-98 364.0 404 52.2
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 3.5e-98 362.8 407 49.9
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 7.8e-98 361.7 410 49.8
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 1.0e-97 361.3 411 50.4
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 1.0e-97 361.3 407 50.4
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.7e-97 360.5 410 49.8
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.0e-97 359.8 413 50.4
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 5.1e-97 359.0 411 51.3
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 6.6e-97 358.6 407 49.4
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 8.7e-97 358.2 404 49.5
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 8.7e-97 358.2 410 49.3
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 1.1e-96 357.8 413 49.4
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 1.5e-96 357.5 408 48.3
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.5e-96 357.5 418 48.8
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 1.9e-96 357.1 407 49.6
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 2.5e-96 356.7 405 51.6
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 4.3e-96 355.9 405 50.6
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 7.3e-96 355.1 405 50.9
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 7.3e-96 355.1 411 50.6
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 7.3e-96 355.1 408 49.3
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 9.6e-96 354.8 405 50.6
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 9.6e-96 354.8 404 51.5
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.3e-95 354.4 407 49.4
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 1.6e-95 354.0 410 48.3
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.6e-95 354.0 405 50.6
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 2.1e-95 353.6 404 50.7
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 2.1e-95 353.6 418 48.3
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 2.1e-95 353.6 418 48.3
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.8e-95 353.2 418 48.3
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 3.6e-95 352.8 405 50.9
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 3.6e-95 352.8 405 50.6
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 3.6e-95 352.8 405 50.6
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 3.6e-95 352.8 405 50.6
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 4.8e-95 352.4 416 48.1
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 1.8e-94 350.5 418 47.6
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 2.4e-94 350.1 407 48.4
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 3.1e-94 349.7 407 48.6
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 4.0e-94 349.4 417 48.0
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 6.9e-94 348.6 407 47.9
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 6.9e-94 348.6 409 49.4
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 9.0e-94 348.2 417 48.0
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 2.0e-93 347.1 401 49.1
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 2.6e-93 346.7 406 50.7
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 2.6e-93 346.7 406 49.5
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 3.4e-93 346.3 410 49.8
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 4.4e-93 345.9 405 49.9
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 5.8e-93 345.5 404 49.3
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 7.6e-93 345.1 439 45.8
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 1.3e-92 344.4 408 48.5
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 4.9e-92 342.4 403 49.1
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 1.1e-91 341.3 417 47.5
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 1.4e-91 340.9 404 49.0
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 2.4e-91 340.1 407 48.9
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 2.4e-91 340.1 407 48.6
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 5.4e-91 339.0 408 48.3
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 5.4e-91 339.0 404 47.3
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.5e-90 336.3 405 48.4
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.0e-89 334.7 376 49.5
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 1.0e-89 334.7 405 48.9
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.7e-89 334.0 405 47.7
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 8.7e-89 331.6 405 47.4
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 8.7e-89 331.6 417 45.8
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 8.7e-89 331.6 405 47.4
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 9.6e-88 328.2 417 45.3
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.1e-87 327.0 405 47.4
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 2.8e-87 326.6 372 48.1
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 3.1e-86 323.2 403 47.4
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 5.3e-86 322.4 373 49.3
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 5.3e-86 322.4 355 51.3
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.5e-85 320.9 408 47.3
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.6e-85 320.1 416 45.4
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 2.6e-85 320.1 417 45.3
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.4e-83 314.3 375 45.9
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 5.4e-83 312.4 405 45.7
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.6e-82 310.8 407 45.7
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 2.1e-82 310.5 464 41.4
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 3.0e-81 306.6 404 46.3
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 1.1e-80 304.7 406 44.1
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.3e-79 301.2 403 43.7
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.3e-79 301.2 351 50.1
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 1.6e-79 300.8 406 43.6
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 3.7e-79 299.7 407 45.0
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 8.1e-79 298.5 422 43.4
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 1.4e-78 297.7 370 45.7
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.5e-77 294.3 411 44.3
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 5.8e-77 292.4 407 43.0
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 1.4e-75 287.7 505 39.4
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 4.2e-75 286.2 311 52.7
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 1.2e-74 284.6 334 47.6
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 3.0e-73 280.0 404 44.3
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 5.7e-72 275.8 247 60.3
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 1.4e-67 261.2 276 52.5
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 4.2e-67 259.6 260 55.4
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 3.0e-65 253.4 406 41.6
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 6.7e-65 252.3 241 56.4
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 6.7e-65 252.3 138 98.6
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.7e-60 237.7 406 38.4
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 2.2e-60 237.3 406 37.9
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 9.4e-59 231.9 403 38.0
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 1.6e-58 231.1 403 37.7
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 7.9e-58 228.8 406 37.4
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.0e-57 226.9 406 38.2
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 4.8e-55 219.5 365 38.4
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 6.3e-55 219.2 368 38.3
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 8.2e-55 218.8 403 36.0
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 2.4e-54 217.2 402 36.6
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 3.1e-54 216.9 408 35.8
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 5.0e-52 209.5 426 35.0
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 1.0e-49 201.8 391 36.1
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 3.2e-43 180.3 179 56.4
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 9.4e-43 178.7 226 43.4
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.8e-41 174.5 226 42.0
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.5e-40 171.4 389 33.4
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.7e-39 167.9 403 34.0
Zm00001eb320260 Zea mays HOM05D001663 ORTHO05D005717 9.1e-38 162.2 90 97.8
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.3e-36 158.3 187 45.5
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.5e-35 154.1 247 38.1
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 2.2e-31 141.0 431 29.5
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.8e-25 121.3 221 37.1
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 2.7e-21 107.5 189 35.4
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 5.0e-20 103.2 405 26.7
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 7.2e-19 99.4 202 33.2
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 9.2e-06 55.8 84 36.9


User provided reference genes

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