Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 5.1e-72 274.2 132 100.0
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 1.3e-51 206.5 131 70.2
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 3.1e-37 158.7 131 55.0
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.0e-35 153.7 132 56.1
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 1.3e-35 153.3 132 56.1
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 1.7e-35 152.9 132 53.0
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.2e-35 152.5 132 53.0
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.2e-35 152.5 132 56.1
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 2.2e-35 152.5 132 54.5
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 3.8e-35 151.8 132 53.8
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 3.8e-35 151.8 132 53.0
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 6.5e-35 151.0 132 53.8
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 6.5e-35 151.0 132 53.8
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 6.5e-35 151.0 132 53.0
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 8.5e-35 150.6 132 54.5
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 8.5e-35 150.6 132 54.5
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 8.5e-35 150.6 132 53.0
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.1e-34 150.2 132 53.0
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.1e-34 150.2 132 54.5
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 1.4e-34 149.8 132 54.5
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.9e-34 149.4 132 53.0
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.9e-34 149.4 132 53.8
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.9e-34 149.4 132 53.8
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 1.9e-34 149.4 132 53.0
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.9e-34 149.4 132 53.0
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.9e-34 149.4 132 53.0
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.9e-34 149.4 132 53.0
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 2.5e-34 149.1 132 53.0
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 2.5e-34 149.1 132 53.8
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 2.5e-34 149.1 132 53.0
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.5e-34 149.1 132 53.0
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.5e-34 149.1 132 53.0
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.5e-34 149.1 134 52.2
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 3.2e-34 148.7 130 53.8
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 3.2e-34 148.7 132 52.3
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.2e-34 148.7 132 53.0
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 3.2e-34 148.7 132 51.5
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 4.2e-34 148.3 132 52.3
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.2e-34 148.3 132 51.5
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 4.2e-34 148.3 132 52.3
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 5.5e-34 147.9 131 53.4
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 5.5e-34 147.9 131 51.9
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 5.5e-34 147.9 132 51.5
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 7.2e-34 147.5 132 53.0
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 9.3e-34 147.1 132 52.3
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 9.3e-34 147.1 132 51.5
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.2e-33 146.7 132 53.0
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.2e-33 146.7 132 50.8
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.2e-33 146.7 132 53.0
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.2e-33 146.7 132 53.8
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.2e-33 146.7 131 51.1
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.6e-33 146.4 132 53.0
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.6e-33 146.4 130 53.1
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 2.1e-33 146.0 132 53.0
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 2.1e-33 146.0 133 53.4
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.1e-33 146.0 132 53.0
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.1e-33 146.0 132 53.0
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.1e-33 146.0 131 50.4
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 2.1e-33 146.0 130 52.3
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 2.7e-33 145.6 132 52.3
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 2.7e-33 145.6 132 51.5
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.6e-33 145.2 133 53.4
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.6e-33 145.2 132 52.3
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 3.6e-33 145.2 132 53.0
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 4.6e-33 144.8 132 50.0
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 4.6e-33 144.8 132 50.8
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.6e-33 144.8 132 50.0
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 4.6e-33 144.8 132 52.3
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 6.1e-33 144.4 132 50.8
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 6.1e-33 144.4 132 52.3
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 6.1e-33 144.4 132 52.3
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 6.1e-33 144.4 132 52.3
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 7.9e-33 144.1 132 50.8
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.9e-33 144.1 132 51.5
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 7.9e-33 144.1 131 50.4
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.0e-32 143.7 130 50.8
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.0e-32 143.7 132 51.5
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.0e-32 143.7 132 50.0
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.0e-32 143.7 132 49.2
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 52.3
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 49.2
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 51.5
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 52.3
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 53.8
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 51.5
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 50.0
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 52.3
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.8e-32 142.9 132 52.3
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.8e-32 142.9 132 51.5
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.8e-32 142.9 132 52.3
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 2.3e-32 142.5 130 47.7
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 2.3e-32 142.5 132 53.0
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.0e-32 142.1 132 50.0
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 3.0e-32 142.1 132 51.5
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.0e-32 142.1 132 50.8
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 3.9e-32 141.7 132 50.0
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 3.9e-32 141.7 132 50.8
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 3.9e-32 141.7 132 51.5
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 5.1e-32 141.4 132 49.2
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 5.1e-32 141.4 132 51.5
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 5.1e-32 141.4 132 50.0
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 6.7e-32 141.0 132 50.0
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.7e-32 141.0 132 50.0
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 6.7e-32 141.0 132 50.0
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 8.7e-32 140.6 132 50.0
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.1e-31 140.2 132 49.2
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.1e-31 140.2 132 49.2
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 1.1e-31 140.2 132 50.8
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 1.5e-31 139.8 132 48.5
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 1.5e-31 139.8 132 48.5
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.9e-31 139.4 132 49.2
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.9e-31 139.4 132 50.0
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.9e-31 139.4 132 50.8
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.9e-31 139.4 132 47.0
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 2.5e-31 139.0 135 51.1
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 3.3e-31 138.7 132 49.2
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 3.3e-31 138.7 132 49.2
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 3.3e-31 138.7 132 49.2
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 4.3e-31 138.3 132 49.2
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 4.3e-31 138.3 132 50.0
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 5.7e-31 137.9 125 51.2
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 5.7e-31 137.9 132 49.2
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 7.4e-31 137.5 132 50.0
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 9.7e-31 137.1 132 48.5
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 9.7e-31 137.1 132 45.5
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.3e-30 136.7 132 47.7
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.2e-30 136.0 131 48.9
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.2e-30 136.0 132 47.7
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.7e-30 135.2 132 48.5
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 4.8e-30 134.8 132 47.7
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 4.8e-30 134.8 132 48.5
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 8.2e-30 134.0 132 48.5
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.1e-29 133.7 130 48.5
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.1e-29 133.7 130 48.5
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.1e-29 133.7 125 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 1.4e-29 133.3 132 50.0
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.8e-29 132.9 132 49.2
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 1.2e-28 130.2 132 46.2
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.2e-28 130.2 125 48.8
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.0e-28 129.4 132 47.0
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 5.9e-28 127.9 130 47.7
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 7.7e-28 127.5 125 47.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.0e-27 127.1 130 46.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.3e-27 126.7 130 46.2
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.7e-27 126.3 132 46.2
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.7e-27 126.3 131 49.6
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.2e-27 125.9 121 49.6
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 2.2e-27 125.9 127 47.2
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 1.9e-26 122.9 124 46.0
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 2.5e-26 122.5 130 43.8
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 5.5e-26 121.3 125 45.6
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 7.2e-26 120.9 119 48.7
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 9.4e-26 120.6 130 45.4
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.1e-23 113.6 138 42.0
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.2e-22 109.4 120 42.5
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.3e-22 107.8 125 40.8
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 2.6e-20 102.4 123 40.7
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 6.5e-19 97.8 132 41.7
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 8.5e-19 97.4 97 46.4
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 7.2e-18 94.4 131 40.5
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.8e-16 89.7 124 35.5
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 7.4e-15 84.3 106 38.7
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.7e-11 73.2 43 65.1
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.5e-10 70.1 131 32.1
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.5e-10 68.2 115 33.0
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 8.0e-09 64.3 75 40.0
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 8.8e-08 60.8 40 60.0
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.3e-07 58.9 40 55.0


User provided reference genes

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