Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb109410 Zea mays HOM05D000708 ORTHO05D445754 1.4e-40 169.1 79 100.0
Zm00001eb209190 Zea mays HOM05D000708 ORTHO05D001418 1.5e-26 122.5 73 80.8
Zm00001eb231570 Zea mays HOM05D000708 ORTHO05D001418 1.9e-26 122.1 71 80.3
Os02g0135500 Oryza sativa ssp. japonica HOM05D000708 ORTHO05D001418 3.5e-20 101.3 71 64.8
Zm00001eb227380 Zea mays HOM05D000708 ORTHO05D001418 2.4e-16 88.6 74 59.5
Os06g0707200 Oryza sativa ssp. japonica HOM05D000708 ORTHO05D001418 3.1e-16 88.2 74 56.8
Zm00001eb188150 Zea mays HOM05D000708 ORTHO05D441820 1.5e-15 85.9 46 82.6
Zm00001eb144500 Zea mays HOM05D000708 ORTHO05D001418 1.6e-09 65.9 63 47.6
Zm00001eb355700 Zea mays HOM05D000708 ORTHO05D001418 4.8e-09 64.3 43 69.8
Potri.012G051500 Populus trichocarpa HOM05D000708 ORTHO05D001418 1.4e-08 62.8 53 54.7
Atru.chr9.936 Acer truncatum HOM05D000708 ORTHO05D001418 1.8e-08 62.4 61 44.3
Potri.015G042300 Populus trichocarpa HOM05D000708 ORTHO05D001418 1.8e-08 62.4 78 39.7
Os10g0492200 Oryza sativa ssp. japonica HOM05D000708 ORTHO05D001418 2.4e-08 62.0 70 40.0
PGR083G0025 Punica granatum HOM05D000708 ORTHO05D001418 2.4e-08 62.0 51 54.9
ClCG04G010800 Citrullus lanatus HOM05D000708 ORTHO05D001418 4.0e-08 61.2 53 47.2
Zm00001eb270290 Zea mays HOM05D000708 ORTHO05D001418 5.3e-08 60.8 67 41.8
Cfa019712 Carpinus fangiana HOM05D000708 ORTHO05D001418 6.9e-08 60.5 51 51.0
Sed0001976 Sechium edule HOM05D000708 ORTHO05D001418 9.0e-08 60.1 61 45.9
PGR044G1263 Punica granatum HOM05D000708 ORTHO05D001418 1.2e-07 59.7 53 50.9
Sabra15G0043000 Salix brachista HOM05D000708 ORTHO05D001418 1.5e-07 59.3 52 53.8
Sabra15G0049200 Salix brachista HOM05D000708 ORTHO05D001418 1.5e-07 59.3 52 53.8
Sabra15G0054400 Salix brachista HOM05D000708 ORTHO05D001418 1.5e-07 59.3 52 53.8
Os02g0331200 Oryza sativa ssp. japonica HOM05D000708 ORTHO05D001418 2.0e-07 58.9 67 43.3
Sabra12G0036100 Salix brachista HOM05D000708 ORTHO05D001418 2.0e-07 58.9 53 50.9
Sabra15G0051200 Salix brachista HOM05D000708 ORTHO05D001418 2.6e-07 58.5 52 53.8
Sabra15G0061000 Salix brachista HOM05D000708 ORTHO05D001418 2.6e-07 58.5 52 53.8
MBI16_g29819_MAGBIO Magnolia biondii HOM05D000708 ORTHO05D001418 4.5e-07 57.8 54 44.4
Aqoxy5G03878 Aquilegia oxysepala HOM05D000708 ORTHO05D001418 5.8e-07 57.4 53 49.1
MD06G1222600 Malus domestica HOM05D000708 ORTHO05D001418 5.8e-07 57.4 78 39.7
Phvul.002G326500 Phaseolus vulgaris HOM05D000708 ORTHO05D001418 5.8e-07 57.4 51 47.1
Sabra15G0047400 Salix brachista HOM05D000708 ORTHO05D001418 5.8e-07 57.4 52 51.9
Lalb_Chr05g0221931 Lupinus albus HOM05D000708 ORTHO05D001418 7.6e-07 57.0 53 47.2
GSVIVG01008368001 Vitis vinifera HOM05D000708 ORTHO05D001418 7.6e-07 57.0 51 51.0
COL.COLO4_33954 Corchorus olitorius HOM05D000708 ORTHO05D001418 9.9e-07 56.6 51 47.1
VMungo0251G3626 Vigna mungo HOM05D000708 ORTHO05D001418 9.9e-07 56.6 51 49.0
Haze_18783 Corylus avellana HOM05D000708 ORTHO05D001418 1.3e-06 56.2 51 47.1
RcHm_v2.0_Chr7g0179171 Rosa chinensis HOM05D000708 ORTHO05D001418 1.3e-06 56.2 52 51.9
Ciclev10010793m.g Citrus clementina HOM05D000708 ORTHO05D001418 2.2e-06 55.5 51 47.1
Prupe.5G227600 Prunus persica HOM05D000708 ORTHO05D001418 2.2e-06 55.5 66 42.4
vmacro17795 Vaccinium macrocarpon HOM05D000708 ORTHO05D001418 2.2e-06 55.5 61 44.3
Oeu041171.2 Olea europaea HOM05D000708 ORTHO05D001418 2.9e-06 55.1 71 40.8
Dinv10411 Davidia involucrata HOM05D000708 ORTHO05D001418 3.8e-06 54.7 70 40.0
HPP92_004889 Vanilla planifolia HOM05D000708 ORTHO05D001418 3.8e-06 54.7 51 52.9
Migut.D01436 Erythranthe guttata HOM05D000708 ORTHO05D001418 4.9e-06 54.3 72 36.1
Prupe.5G227200 Prunus persica HOM05D000708 ORTHO05D001418 4.9e-06 54.3 51 49.0
Dinv10412 Davidia involucrata HOM05D000708 ORTHO05D001418 6.4e-06 53.9 51 47.1
Gohir.D09G051700 Gossypium hirsutum HOM05D000708 ORTHO05D001418 6.4e-06 53.9 50 46.0
Gorai.006G057800 Gossypium raimondii HOM05D000708 ORTHO05D001418 6.4e-06 53.9 50 46.0
Cc04_g06720 Coffea canephora HOM05D000708 ORTHO05D001418 8.4e-06 53.5 53 50.9
MD06G1222700 Malus domestica HOM05D000708 ORTHO05D001418 8.4e-06 53.5 76 39.5


User provided reference genes

Program Settings