Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 5.9e-35 150.2 70 100.0
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.8e-20 102.1 71 73.2
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 4.5e-19 97.4 62 69.4
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.9e-19 97.1 52 82.7
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 5.9e-19 97.1 60 76.7
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.7e-18 95.5 59 74.6
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 2.2e-18 95.1 57 77.2
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 2.9e-18 94.7 62 69.4
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 3.8e-18 94.4 62 72.6
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.8e-18 94.4 62 72.6
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.8e-18 94.4 62 72.6
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.8e-18 94.4 62 72.6
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 3.8e-18 94.4 62 72.6
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 5.0e-18 94.0 58 70.7
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 5.0e-18 94.0 59 74.6
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.0e-18 94.0 53 77.4
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.0e-18 94.0 53 77.4
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 5.0e-18 94.0 58 72.4
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 5.0e-18 94.0 58 75.9
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 6.5e-18 93.6 59 72.9
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 6.5e-18 93.6 59 74.6
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 6.5e-18 93.6 64 65.6
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 6.5e-18 93.6 59 74.6
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 8.5e-18 93.2 58 72.4
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.5e-18 93.2 60 73.3
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.5e-18 93.2 60 73.3
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 8.5e-18 93.2 60 71.7
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.1e-17 92.8 61 72.1
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.1e-17 92.8 57 75.4
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.4e-17 92.4 60 71.7
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.4e-17 92.4 58 77.6
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 1.4e-17 92.4 60 70.0
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.4e-17 92.4 59 74.6
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.4e-17 92.4 59 74.6
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 1.9e-17 92.0 63 69.8
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 2.5e-17 91.7 59 69.5
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 2.5e-17 91.7 53 79.2
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.2e-17 91.3 62 69.4
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.2e-17 91.3 62 69.4
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.2e-17 91.3 62 69.4
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 3.2e-17 91.3 62 66.1
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 4.2e-17 90.9 58 69.0
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 4.2e-17 90.9 58 70.7
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.2e-17 90.9 52 75.0
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 5.5e-17 90.5 54 75.9
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 5.5e-17 90.5 65 63.1
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 5.5e-17 90.5 57 73.7
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 5.5e-17 90.5 59 72.9
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 9.4e-17 89.7 60 71.7
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 1.2e-16 89.4 56 73.2
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 1.2e-16 89.4 60 71.7
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.2e-16 89.4 52 76.9
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 1.2e-16 89.4 52 71.2
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.2e-16 89.4 58 69.0
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.6e-16 89.0 53 75.5
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 1.6e-16 89.0 60 68.3
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 2.1e-16 88.6 55 72.7
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.1e-16 88.6 53 75.5
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 2.1e-16 88.6 58 70.7
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 2.1e-16 88.6 59 69.5
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 2.7e-16 88.2 52 75.0
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.7e-16 88.2 58 70.7
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 3.6e-16 87.8 58 70.7
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 3.6e-16 87.8 59 69.5
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.6e-16 87.8 51 74.5
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 4.7e-16 87.4 52 75.0
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 4.7e-16 87.4 60 70.0
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 6.1e-16 87.0 59 69.5
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 6.1e-16 87.0 64 64.1
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.1e-16 87.0 65 61.5
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 8.0e-16 86.7 51 74.5
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 8.0e-16 86.7 63 65.1
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 8.0e-16 86.7 63 63.5
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 8.0e-16 86.7 59 64.4
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.0e-15 86.3 60 70.0
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.0e-15 86.3 60 70.0
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.0e-15 86.3 60 68.3
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.4e-15 85.9 60 68.3
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 1.8e-15 85.5 63 66.7
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 1.8e-15 85.5 60 68.3
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 1.8e-15 85.5 52 71.2
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.8e-15 85.5 58 67.2
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.8e-15 85.5 62 64.5
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.8e-15 85.5 57 63.2
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 2.3e-15 85.1 56 71.4
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 2.3e-15 85.1 56 71.4
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-15 85.1 60 70.0
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-15 85.1 60 70.0
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.3e-15 85.1 60 70.0
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.3e-15 85.1 59 69.5
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 3.0e-15 84.7 59 67.8
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 3.0e-15 84.7 53 75.5
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 3.9e-15 84.3 65 64.6
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 3.9e-15 84.3 56 71.4
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 3.9e-15 84.3 56 71.4
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.9e-15 84.3 52 69.2
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 3.9e-15 84.3 57 59.6
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.9e-15 84.3 52 75.0
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 6.7e-15 83.6 57 64.9
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 1.1e-14 82.8 66 57.6
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.1e-14 82.8 53 71.7
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 1.5e-14 82.4 63 65.1
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.5e-14 82.4 58 63.8
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.5e-14 82.4 62 66.1
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 2.0e-14 82.0 63 65.1
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-14 82.0 58 63.8
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 2.0e-14 82.0 58 65.5
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.3e-14 81.3 64 57.8
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 4.4e-14 80.9 52 67.3
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 5.7e-14 80.5 52 65.4
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 9.7e-14 79.7 67 64.2
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 9.7e-14 79.7 52 63.5
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 9.7e-14 79.7 61 62.3
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 1.7e-13 79.0 52 59.6
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.2e-13 78.6 61 59.0
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.8e-13 77.4 54 66.7
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 4.8e-13 77.4 57 61.4
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 3.1e-12 74.7 58 60.3
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 4.1e-12 74.3 52 59.6
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 9.1e-12 73.2 45 77.8
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 1.0e-10 69.7 65 52.3
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 6.5e-10 67.0 52 53.8
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 2.5e-09 65.1 37 78.4
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 7.2e-09 63.5 52 53.8
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.1e-08 62.0 48 58.3
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.7e-08 61.6 49 61.2
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 6.1e-08 60.5 41 65.9
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.2e-07 57.4 52 51.9
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 7.5e-06 53.5 70 37.1
Pp3c4_16391 Physcomitrium patens HOM05D002570 ORTHO05D002689 7.5e-06 53.5 71 36.6


User provided reference genes

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