Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb105880 Zea mays HOM05D007063 ORTHO05D008822 1.4e-163 580.9 336 100.0
Os07g0513200 Oryza sativa ssp. japonica HOM05D007063 ORTHO05D008822 6.3e-103 379.4 277 81.6
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 4.2e-22 110.9 294 32.3
Ciclev10030848m.g Citrus clementina HOM05D007063 ORTHO05D008822 6.7e-12 77.0 253 32.0
MBI16_g31483_MAGBIO Magnolia biondii HOM05D007063 ORTHO05D008822 6.7e-12 77.0 247 29.1
CDE06G2628 Ceratophyllum demersum HOM05D007063 ORTHO05D008822 2.6e-11 75.1 125 37.6
Medtr8g105170 Medicago truncatula HOM05D007063 ORTHO05D008822 1.3e-10 72.8 279 29.0
Psat4g129080 Pisum sativum HOM05D007063 ORTHO05D008822 3.7e-10 71.2 277 28.2
Aqoxy3G00599 Aquilegia oxysepala HOM05D007063 ORTHO05D008822 6.3e-10 70.5 107 38.3
COL.COLO4_04706 Corchorus olitorius HOM05D007063 ORTHO05D008822 6.3e-10 70.5 252 32.1
Glyma.18G128532 Glycine max HOM05D007063 ORTHO05D008822 8.2e-10 70.1 165 30.9
Lj4g0004753 Lotus japonicus HOM05D007063 ORTHO05D008822 1.1e-09 69.7 263 29.3
Ca_22836_v3 Cicer arietinum L. HOM05D007063 ORTHO05D008822 1.4e-09 69.3 252 29.0
TWI36G0287 Tripterygium wilfordii HOM05D007063 ORTHO05D008822 1.4e-09 69.3 124 34.7
MD13G1082300 Malus domestica HOM05D007063 ORTHO05D008822 2.4e-09 68.6 124 35.5
CiPaw.05G142300 Carya illinoinensis HOM05D007063 ORTHO05D008822 3.1e-09 68.2 261 29.1
TPR.G10111 Trifolium pratense HOM05D007063 ORTHO05D008822 4.1e-09 67.8 258 26.7
RhsimUnG0180400 Rhododendron simsii HOM05D007063 ORTHO05D008822 5.3e-09 67.4 257 27.6
RhsimUnG0211600 Rhododendron simsii HOM05D007063 ORTHO05D008822 5.3e-09 67.4 257 27.6
TAR376G0861 Trochodendron aralioides HOM05D007063 ORTHO05D008822 6.9e-09 67.0 250 28.4
Atru.BG.286.p Acer truncatum HOM05D007063 ORTHO05D008822 9.1e-09 66.6 124 35.5
PSO541G5427 Papaver somniferum HOM05D007063 ORTHO05D008822 9.1e-09 66.6 165 30.3
Ca_25037_v3 Cicer arietinum L. HOM05D007063 ORTHO05D008822 1.2e-08 66.2 252 28.6
MELO3C010126.2 Cucumis melo HOM05D007063 ORTHO05D008822 1.2e-08 66.2 248 29.8
RcHm_v2.0_Chr4g0445191 Rosa chinensis HOM05D007063 ORTHO05D008822 1.2e-08 66.2 250 28.8
Cfa009057 Carpinus fangiana HOM05D007063 ORTHO05D008822 2.6e-08 65.1 252 28.2
BcaC05g24351 Brassica carinata HOM05D007063 ORTHO05D008822 3.4e-08 64.7 235 28.5
A10p04430 Brassica napus HOM05D007063 ORTHO05D008822 3.4e-08 64.7 235 28.5
C05p04030 Brassica napus HOM05D007063 ORTHO05D008822 4.5e-08 64.3 235 28.5
BolC5t29181H Brassica oleracea HOM05D007063 ORTHO05D008822 4.5e-08 64.3 235 28.5
QL03p066494 Quercus lobata HOM05D007063 ORTHO05D008822 4.5e-08 64.3 262 26.0
Lalb_Chr05g0230141 Lupinus albus HOM05D007063 ORTHO05D008822 5.9e-08 63.9 244 28.3
Sed0009977 Sechium edule HOM05D007063 ORTHO05D008822 5.9e-08 63.9 258 29.8
BraA10t42710Z Brassica rapa HOM05D007063 ORTHO05D008822 1.0e-07 63.2 235 28.1
PGR119G2491 Punica granatum HOM05D007063 ORTHO05D008822 1.0e-07 63.2 251 28.7
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 1.3e-07 62.8 260 27.7
Phvul.003G071600 Phaseolus vulgaris HOM05D007063 ORTHO05D008822 1.7e-07 62.4 262 28.2
TPR.G21860 Trifolium pratense HOM05D007063 ORTHO05D008822 3.8e-07 61.2 229 26.6
Sp1g04490 Schrenkiella parvula HOM05D007063 ORTHO05D008822 5.0e-07 60.8 256 27.0
Aa31LG1G18980 Aethionema arabicum HOM05D000150 ORTHO05D000108 6.5e-07 60.5 250 26.8
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 6.5e-07 60.5 251 27.9
PSO675G2478 Papaver somniferum HOM05D007063 ORTHO05D008822 8.5e-07 60.1 158 27.8
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 8.5e-07 60.1 149 26.8
DCAR_026582 Daucus carota HOM05D007063 ORTHO05D008822 1.1e-06 59.7 245 27.8
Potri.010G035700 Populus trichocarpa HOM05D007063 ORTHO05D008822 1.1e-06 59.7 271 27.3
Prupe.3G121700 Prunus persica HOM05D007063 ORTHO05D008822 1.4e-06 59.3 251 27.9
THA.LOC104822081 Tarenaya hassleriana HOM05D007063 ORTHO05D008822 1.4e-06 59.3 260 26.9
MD16G1081400 Malus domestica HOM05D007063 ORTHO05D008822 2.5e-06 58.5 258 26.7
Sabra10G0029200 Salix brachista HOM05D007063 ORTHO05D008822 2.5e-06 58.5 260 27.7
Sc04g0008550 Simmondsia chinensis HOM05D007063 ORTHO05D008822 2.5e-06 58.5 123 31.7
Carub.0001s0501 Capsella rubella HOM05D007063 ORTHO05D008822 3.2e-06 58.2 250 26.4
CsaV3_1G045100 Cucumis sativus L. HOM05D007063 ORTHO05D008822 3.2e-06 58.2 248 27.8
Thhalv10006886m.g Eutrema salsugineum HOM05D000001 ORTHO05D010365 3.2e-06 58.2 55 56.4
Thecc.02G235700 Theobroma cacao HOM05D007063 ORTHO05D008822 3.2e-06 58.2 257 27.2
Glyma.08G294400 Glycine max HOM05D007063 ORTHO05D008822 4.2e-06 57.8 268 26.5
Gorai.002G000500 Gossypium raimondii HOM05D007063 ORTHO05D008822 5.5e-06 57.4 124 32.3
Gorai.010G000600 Gossypium raimondii HOM05D007063 ORTHO05D008822 5.5e-06 57.4 124 32.3
AT1G05670 Arabidopsis thaliana HOM05D007063 ORTHO05D008822 7.2e-06 57.0 236 27.5
BcaC06g35638 Brassica carinata HOM05D007063 ORTHO05D008822 7.2e-06 57.0 243 26.7
C07p12680 Brassica napus HOM05D007063 ORTHO05D008822 7.2e-06 57.0 243 26.7
VMungo0251G0088 Vigna mungo HOM05D007063 ORTHO05D008822 7.2e-06 57.0 250 28.0
Ah.02g131890 Amaranthus hybridus HOM05D007063 ORTHO05D008822 9.4e-06 56.6 258 26.0


User provided reference genes

Program Settings