Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 6.7e-97 357.5 195 100.0
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 2.8e-74 282.3 195 80.0
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 7.3e-35 151.4 178 45.5
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 1.4e-33 147.1 169 47.3
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 1.8e-33 146.7 179 45.8
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 2.4e-33 146.4 167 48.5
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.5e-32 143.7 187 46.0
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 2.0e-32 143.3 178 44.4
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 2.0e-32 143.3 178 46.1
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.6e-32 142.9 158 47.5
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.6e-32 142.9 178 44.9
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 3.4e-32 142.5 185 43.8
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 5.8e-32 141.7 174 46.0
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 7.6e-32 141.4 178 46.1
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 9.9e-32 141.0 178 44.4
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 2.2e-31 139.8 178 43.8
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 2.9e-31 139.4 140 48.6
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 3.8e-31 139.0 179 45.3
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 3.8e-31 139.0 178 43.8
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 4.9e-31 138.7 176 43.8
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 4.9e-31 138.7 176 43.8
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 6.4e-31 138.3 178 42.7
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 8.4e-31 137.9 176 43.8
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 8.4e-31 137.9 176 43.8
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.4e-30 137.1 170 44.7
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 1.4e-30 137.1 158 46.2
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.9e-30 136.7 176 43.8
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 2.4e-30 136.3 176 42.6
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.2e-30 136.0 166 44.6
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 3.2e-30 136.0 179 44.1
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 5.4e-30 135.2 163 47.9
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 7.1e-30 134.8 171 45.0
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 7.1e-30 134.8 165 44.2
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 7.1e-30 134.8 157 46.5
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 9.3e-30 134.4 162 46.9
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 9.3e-30 134.4 164 44.5
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 9.3e-30 134.4 158 46.2
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 9.3e-30 134.4 158 46.8
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 1.2e-29 134.0 151 43.7
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 2.1e-29 133.3 179 42.5
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.7e-29 132.9 174 42.5
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 2.7e-29 132.9 157 43.9
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 2.7e-29 132.9 173 42.8
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 6.0e-29 131.7 164 41.5
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 7.8e-29 131.3 177 42.9
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 7.8e-29 131.3 169 43.8
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.3e-28 129.8 164 42.7
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 3.9e-28 129.0 153 47.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 6.6e-28 128.3 165 43.6
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 1.5e-27 127.1 176 43.2
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 3.3e-27 125.9 167 43.7
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 3.3e-27 125.9 153 44.4
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 3.3e-27 125.9 151 45.0
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 4.3e-27 125.6 182 41.2
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 5.6e-27 125.2 169 40.8
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 7.3e-27 124.8 177 41.2
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 1.6e-26 123.6 171 42.7
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 2.1e-26 123.2 173 40.5
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 3.6e-26 122.5 171 42.1
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 3.6e-26 122.5 169 40.8
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 4.8e-26 122.1 166 42.2
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 6.2e-26 121.7 177 39.5
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 1.8e-25 120.2 173 39.3
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.8e-25 120.2 161 43.5
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 2.4e-25 119.8 156 45.5
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 4.0e-25 119.0 134 49.3
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 5.3e-25 118.6 111 50.5
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 6.9e-25 118.2 155 40.6
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 9.0e-25 117.9 153 44.4
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.5e-24 117.1 154 42.9
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 2.6e-24 116.3 172 39.5
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 2.6e-24 116.3 169 39.1
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 4.5e-24 115.5 168 39.9
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 4.5e-24 115.5 148 42.6
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 7.6e-24 114.8 151 44.4
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 7.6e-24 114.8 162 39.5
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 7.6e-24 114.8 167 43.7
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 7.6e-24 114.8 156 45.5
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 9.9e-24 114.4 160 43.8
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.3e-23 114.0 168 36.9
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 1.7e-23 113.6 134 44.0
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 4.9e-23 112.1 168 38.1
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 8.4e-23 111.3 155 44.5
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.1e-22 110.9 149 43.0
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 3.2e-22 109.4 131 44.3
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 4.2e-22 109.0 136 44.9
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 7.1e-22 108.2 181 38.1
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.2e-21 107.5 124 45.2
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 3.5e-21 105.9 130 45.4
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 1.3e-20 104.0 161 39.1
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 1.8e-20 103.6 142 42.3
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.8e-20 103.6 143 45.5
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 3.0e-20 102.8 141 36.2
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 5.1e-20 102.1 133 39.8
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 7.4e-19 98.2 142 43.0
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.3e-18 97.4 131 42.0
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 3.7e-18 95.9 127 40.2
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 3.7e-18 95.9 149 38.9
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 8.1e-18 94.7 143 39.9
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 6.9e-17 91.7 131 39.7
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 2.6e-16 89.7 130 40.8
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 2.4e-14 83.2 164 33.5
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 1.2e-13 80.9 110 40.9
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 2.7e-13 79.7 169 32.5
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 4.8e-10 68.9 74 54.1
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 4.8e-10 68.9 74 54.1
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.0e-07 61.2 126 36.5


User provided reference genes

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