Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.5e-206 722.6 376 100.0
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.7e-163 578.9 378 83.1
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 8.9e-138 494.2 313 78.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 2.6e-137 492.7 313 77.3
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.4e-137 491.9 323 76.5
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 9.8e-137 490.7 313 76.7
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 9.8e-137 490.7 313 76.7
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.7e-136 490.0 313 76.4
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.2e-136 489.6 332 75.9
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 2.9e-136 489.2 313 77.6
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.9e-135 486.5 326 75.5
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 2.4e-135 486.1 313 76.7
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 7.0e-135 484.6 331 74.9
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 9.2e-135 484.2 313 76.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 9.2e-135 484.2 348 70.4
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.7e-134 482.6 313 76.7
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.7e-134 482.6 326 74.8
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.7e-134 482.6 313 76.4
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 4.6e-134 481.9 313 76.7
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 6.0e-134 481.5 313 76.7
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 6.0e-134 481.5 327 75.2
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.0e-133 480.7 313 77.0
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.7e-133 479.9 312 76.3
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 1.7e-133 479.9 313 77.6
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.3e-133 479.6 313 78.0
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 3.0e-133 479.2 324 75.0
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 3.0e-133 479.2 313 76.4
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 3.0e-133 479.2 372 67.2
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 5.0e-133 478.4 313 76.7
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 5.0e-133 478.4 350 70.9
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 5.0e-133 478.4 340 72.4
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 5.0e-133 478.4 314 75.5
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 6.6e-133 478.0 336 73.5
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 6.6e-133 478.0 354 70.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 6.6e-133 478.0 355 69.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 6.6e-133 478.0 331 74.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 6.6e-133 478.0 357 68.1
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 8.6e-133 477.6 329 73.3
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 8.6e-133 477.6 327 74.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 8.6e-133 477.6 313 76.0
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.5e-132 476.9 341 72.4
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.5e-132 476.1 323 74.6
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 2.5e-132 476.1 328 74.1
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 2.5e-132 476.1 346 72.5
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 2.5e-132 476.1 313 77.0
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.3e-132 475.7 331 74.3
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.3e-132 475.7 316 74.7
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.3e-132 475.7 327 74.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 3.3e-132 475.7 313 76.0
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.3e-132 475.3 313 75.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 5.6e-132 474.9 336 72.6
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 5.6e-132 474.9 358 69.8
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 5.6e-132 474.9 366 67.5
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 7.3e-132 474.6 313 75.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 7.3e-132 474.6 351 69.5
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 9.5e-132 474.2 313 76.0
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 9.5e-132 474.2 313 76.0
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 9.5e-132 474.2 320 73.8
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.2e-131 473.8 313 75.7
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 1.2e-131 473.8 313 76.4
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.6e-131 473.4 313 75.4
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.6e-131 473.4 313 74.8
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 2.1e-131 473.0 331 72.5
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.1e-131 473.0 313 76.4
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 3.6e-131 472.2 313 75.4
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.2e-131 471.5 361 69.5
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 6.2e-131 471.5 313 75.4
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.1e-130 470.7 353 69.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.1e-130 470.7 314 75.8
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.1e-130 469.2 347 68.9
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 5.2e-130 468.4 312 75.0
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 5.2e-130 468.4 313 75.1
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 5.2e-130 468.4 336 71.1
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 6.8e-130 468.0 347 70.9
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.5e-129 466.8 313 74.8
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.6e-129 466.1 347 70.3
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.4e-127 460.3 379 65.7
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 7.1e-127 458.0 374 65.0
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.0e-125 452.6 410 61.0
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.6e-123 446.8 313 71.9
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 4.9e-120 435.3 309 70.9
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 8.4e-120 434.5 287 75.6
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.4e-119 433.0 280 75.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.3e-117 427.2 300 70.7
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 8.6e-117 424.5 316 69.3
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.6e-117 424.5 308 70.8
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 5.6e-116 421.8 318 70.1
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 9.6e-116 421.0 316 69.0
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 9.6e-116 421.0 342 67.0
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 5.2e-114 415.2 316 69.0
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.9e-111 406.8 264 76.1
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.7e-109 400.2 363 60.6
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 8.7e-109 397.9 263 74.1
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.7e-109 397.9 408 56.6
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 1.9e-108 396.7 303 65.7
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.6e-107 393.7 258 75.2
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 2.4e-106 389.8 282 68.8
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 2.2e-104 383.3 255 75.3
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 4.9e-104 382.1 313 65.5
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.6e-102 375.6 242 78.5
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 3.0e-101 372.9 362 57.7
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 2.9e-96 356.3 313 59.7
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 7.1e-95 351.7 322 58.7
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.2e-89 334.3 221 73.8
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 5.8e-89 332.0 220 81.4
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.6e-86 323.9 318 57.5
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.1e-82 309.7 200 73.5
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.2e-81 307.8 313 55.0
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.9e-80 303.1 234 65.0
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 3.2e-79 299.7 192 78.1
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 3.5e-78 296.2 305 53.4
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.8e-74 283.9 187 75.9
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 7.2e-63 245.4 167 74.3
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.1e-58 229.9 190 60.5
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.6e-52 210.3 151 68.2
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 4.8e-51 206.1 338 41.4
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.1e-50 203.4 272 43.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 4.5e-49 199.5 186 57.5
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 5.9e-41 172.6 118 73.7
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.3e-40 171.4 170 55.9
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.3e-40 171.4 280 37.1
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 5.0e-40 169.5 240 47.5
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 5.6e-31 139.4 262 37.4
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 3.6e-30 136.7 140 56.4
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 3.0e-29 133.7 94 64.9
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 6.8e-29 132.5 255 36.5
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.2e-28 131.7 93 62.4
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.2e-28 131.7 85 69.4
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.7e-27 126.7 101 68.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 6.6e-24 115.9 81 71.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-18 98.2 59 86.4
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.9e-18 97.8 109 51.4
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.4e-18 96.3 70 68.6
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 7.0e-18 95.9 113 46.9
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.7e-17 94.0 88 62.5
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 8.1e-14 82.4 62 62.9
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.0e-13 80.1 54 63.0
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 5.2e-13 79.7 55 67.3
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 4.4e-12 76.6 108 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.5e-07 60.8 96 41.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.3e-07 60.5 43 65.1
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 8.1e-06 55.8 34 73.5


User provided reference genes

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