Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.3e-252 875.9 441 100.0
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 8.1e-207 723.8 405 91.9
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 3.1e-206 721.8 383 93.0
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 8.4e-188 660.6 430 78.4
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 9.3e-187 657.1 376 85.4
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 9.3e-187 657.1 389 83.8
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 3.0e-185 652.1 401 80.3
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 6.7e-185 651.0 384 82.8
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.1e-184 650.2 452 76.8
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.5e-184 649.8 391 80.8
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.9e-184 649.4 403 78.9
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 4.3e-184 648.3 365 85.8
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 7.4e-184 647.5 406 77.8
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 9.6e-184 647.1 404 79.0
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 9.6e-184 647.1 384 81.5
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.3e-183 646.7 405 78.3
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.6e-183 646.4 365 86.0
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 1.6e-183 646.4 439 76.8
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 2.8e-183 645.6 457 73.5
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.7e-183 645.2 404 77.7
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.8e-183 644.8 386 81.9
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.2e-183 644.4 368 84.0
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 8.1e-183 644.0 446 74.9
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 8.1e-183 644.0 450 74.7
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.4e-182 643.3 440 74.8
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.4e-182 643.3 395 81.0
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.8e-182 642.9 433 75.5
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.4e-182 642.5 399 79.9
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 3.1e-182 642.1 404 78.5
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 3.1e-182 642.1 390 81.5
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.1e-182 642.1 392 80.4
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 4.0e-182 641.7 400 80.5
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 4.0e-182 641.7 389 81.7
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 4.0e-182 641.7 457 72.9
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.0e-182 641.7 423 77.1
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 4.0e-182 641.7 404 80.2
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 6.9e-182 641.0 389 81.2
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.5e-181 639.8 389 81.0
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 2.0e-181 639.4 462 73.2
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.0e-181 639.4 412 77.7
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 3.4e-181 638.6 412 77.4
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 3.4e-181 638.6 389 81.2
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 4.5e-181 638.3 365 85.5
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.5e-181 638.3 417 76.5
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 4.5e-181 638.3 389 80.2
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 7.6e-181 637.5 416 77.6
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 7.6e-181 637.5 442 74.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 7.6e-181 637.5 395 79.7
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 9.9e-181 637.1 412 77.4
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 9.9e-181 637.1 398 79.9
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.9e-181 637.1 423 76.4
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.3e-180 636.7 389 80.5
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.3e-180 636.7 386 79.8
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 1.7e-180 636.3 389 80.2
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 3.8e-180 635.2 393 80.7
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 3.8e-180 635.2 401 79.8
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 3.8e-180 635.2 385 81.0
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 4.9e-180 634.8 388 80.9
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 4.9e-180 634.8 386 80.3
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 6.4e-180 634.4 387 81.4
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.1e-179 633.6 439 74.3
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.1e-179 633.6 439 74.3
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 2.5e-179 632.5 418 75.6
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 3.2e-179 632.1 408 77.2
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 5.5e-179 631.3 386 79.3
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 5.5e-179 631.3 408 76.2
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 7.1e-179 630.9 408 77.2
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 7.1e-179 630.9 376 80.3
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 9.3e-179 630.6 396 79.8
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.6e-178 629.8 414 76.1
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.1e-178 629.4 409 77.3
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 2.1e-178 629.4 389 79.4
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 2.7e-178 629.0 444 73.2
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 3.5e-178 628.6 445 72.4
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 4.6e-178 628.2 449 73.5
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.0e-177 627.1 418 76.3
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.0e-177 627.1 447 72.9
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.3e-177 626.7 423 75.9
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.8e-177 626.3 446 73.8
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 3.0e-177 625.5 441 72.6
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.9e-177 625.2 457 73.5
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 5.1e-177 624.8 445 73.9
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 5.1e-177 624.8 396 77.8
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 5.1e-177 624.8 387 79.6
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 8.7e-177 624.0 368 82.9
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.1e-176 623.6 446 74.0
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 1.5e-176 623.2 443 73.4
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.5e-176 623.2 446 73.5
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.9e-176 622.9 387 79.6
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 3.3e-176 622.1 433 73.9
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 3.3e-176 622.1 387 79.3
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 7.4e-176 620.9 446 73.3
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 7.4e-176 620.9 446 73.3
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.3e-175 620.2 390 79.5
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 1.3e-175 620.2 447 73.4
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.6e-175 619.8 447 72.7
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.1e-174 617.1 365 81.6
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.4e-174 615.9 411 74.7
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.0e-174 615.1 369 81.8
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 4.0e-174 615.1 445 73.0
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 5.3e-174 614.8 482 67.0
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.3e-172 610.1 361 81.7
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.0e-170 601.3 424 73.6
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 9.7e-168 594.0 444 68.7
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.1e-166 589.0 328 87.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.9e-163 579.7 410 70.0
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.4e-161 573.5 384 74.5
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 5.1e-161 571.6 378 72.2
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 2.9e-156 555.8 364 73.9
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.5e-152 543.5 423 68.8
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 4.1e-150 535.4 360 72.8
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 2.0e-149 533.1 433 67.7
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.9e-148 529.3 391 66.5
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.7e-144 515.0 287 87.1
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.0e-140 504.2 287 85.7
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 5.5e-139 498.4 462 59.1
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 3.6e-138 495.7 358 66.2
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 1.3e-132 477.2 361 65.1
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.2e-128 464.2 288 81.6
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 3.4e-128 462.6 260 86.2
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.7e-124 450.3 370 63.8
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-121 440.3 268 80.6
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 4.4e-112 409.1 233 85.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.7e-111 406.0 306 68.6
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 7.1e-102 375.2 440 50.7
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.1e-100 369.0 224 79.9
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.4e-88 329.7 256 68.8
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 3.8e-79 299.7 318 46.2
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 1.9e-78 297.4 200 69.5
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.3e-74 284.6 273 57.1
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.1e-70 271.6 246 57.7
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 5.4e-70 269.2 355 44.5
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 6.9e-65 252.3 161 76.4
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.4e-54 218.0 353 40.2
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 5.7e-51 206.1 207 59.4
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 6.5e-47 192.6 172 59.9
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.6e-45 186.8 110 78.2
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 8.8e-44 182.2 184 57.1
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.2e-30 136.0 83 74.7
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.2e-30 136.0 83 74.7
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 2.0e-24 117.9 77 72.7
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 2.2e-23 114.4 129 51.2
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 2.2e-23 114.4 129 51.2
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.1e-21 107.8 71 71.8
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.0e-20 104.0 69 69.6
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 8.8e-20 102.4 64 79.7
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 3.4e-19 100.5 113 48.7
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.0e-07 62.4 56 55.4
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.5e-06 58.5 34 73.5


User provided reference genes

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