Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 1.1e-195 686.4 331 100.0
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 2.0e-101 373.2 190 93.7
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 2.5e-96 356.3 205 86.3
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 4.8e-95 352.1 237 75.9
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 6.9e-94 348.2 218 75.2
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.6e-93 346.3 187 84.0
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 4.5e-93 345.5 218 74.3
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 5.9e-93 345.1 218 74.3
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 7.7e-93 344.7 218 74.8
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.0e-92 344.4 218 72.5
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 1.3e-92 344.0 218 73.9
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.7e-92 343.6 218 73.4
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.2e-92 343.2 218 73.9
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 2.9e-92 342.8 218 73.9
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 3.8e-92 342.4 187 83.4
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 3.8e-92 342.4 218 72.9
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 3.8e-92 342.4 218 73.4
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 5.0e-92 342.0 221 72.9
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 5.0e-92 342.0 221 72.9
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 5.0e-92 342.0 218 72.9
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 72.9
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 72.9
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 72.9
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 72.9
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 72.9
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 72.9
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 72.9
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 6.5e-92 341.7 218 73.9
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 8.5e-92 341.3 221 72.9
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 1.1e-91 340.9 218 73.4
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 1.1e-91 340.9 218 72.5
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-91 340.9 218 72.0
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.1e-91 340.9 187 82.9
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.1e-91 340.9 187 82.9
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.1e-91 340.9 187 82.9
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.1e-91 340.9 218 72.9
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 1.4e-91 340.5 218 72.9
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 1.4e-91 340.5 218 72.9
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.4e-91 340.5 207 75.4
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 1.9e-91 340.1 218 72.0
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.9e-91 340.1 207 75.8
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.9e-91 340.1 218 72.5
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 2.5e-91 339.7 218 72.5
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 2.5e-91 339.7 207 75.8
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 2.5e-91 339.7 218 73.4
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 3.2e-91 339.3 187 82.4
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 3.2e-91 339.3 187 82.9
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 4.2e-91 339.0 187 82.4
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 4.2e-91 339.0 207 74.9
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 4.2e-91 339.0 218 72.5
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 5.5e-91 338.6 207 74.9
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 5.5e-91 338.6 207 74.9
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 7.2e-91 338.2 218 72.9
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 7.2e-91 338.2 218 72.0
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 7.2e-91 338.2 218 72.0
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 7.2e-91 338.2 218 72.5
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 7.2e-91 338.2 215 73.0
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 7.2e-91 338.2 207 74.9
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 9.4e-91 337.8 218 72.0
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 9.4e-91 337.8 218 72.5
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 1.2e-90 337.4 187 81.3
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.2e-90 337.4 207 75.4
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 1.2e-90 337.4 187 81.3
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 1.2e-90 337.4 218 71.1
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.6e-90 337.0 218 72.5
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 1.6e-90 337.0 218 71.6
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 1.6e-90 337.0 218 72.5
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 2.1e-90 336.7 218 72.5
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 2.1e-90 336.7 187 81.3
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 2.1e-90 336.7 218 70.6
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.1e-90 336.7 218 72.0
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 2.7e-90 336.3 218 71.6
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 3.6e-90 335.9 218 72.0
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 3.6e-90 335.9 211 74.4
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 3.6e-90 335.9 215 73.0
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 3.6e-90 335.9 215 72.6
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 6.1e-90 335.1 218 71.6
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 6.1e-90 335.1 187 80.2
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 6.1e-90 335.1 221 70.6
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 7.9e-90 334.7 220 71.4
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 7.9e-90 334.7 231 69.3
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.0e-89 334.3 218 72.5
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.4e-89 334.0 218 71.1
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.4e-89 334.0 218 71.1
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.4e-89 334.0 207 74.4
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 1.8e-89 333.6 207 72.5
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 1.8e-89 333.6 207 72.5
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 2.3e-89 333.2 187 80.7
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 2.3e-89 333.2 191 80.1
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.3e-89 333.2 218 71.6
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.3e-89 333.2 207 74.9
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 2.3e-89 333.2 207 74.9
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 2.3e-89 333.2 218 70.2
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 3.0e-89 332.8 185 81.1
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 3.9e-89 332.4 207 72.5
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 3.9e-89 332.4 221 70.1
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 5.1e-89 332.0 218 70.2
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 5.1e-89 332.0 176 84.7
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 5.1e-89 332.0 207 72.5
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 5.1e-89 332.0 207 72.5
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 5.1e-89 332.0 207 72.5
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 5.1e-89 332.0 207 72.5
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 5.1e-89 332.0 207 72.5
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 5.1e-89 332.0 218 72.5
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 5.1e-89 332.0 218 71.6
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 6.7e-89 331.6 187 80.2
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 6.7e-89 331.6 207 72.0
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 6.7e-89 331.6 187 80.2
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 1.1e-88 330.9 207 71.5
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 1.5e-88 330.5 207 71.5
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 2.0e-88 330.1 207 71.5
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 2.0e-88 330.1 207 71.5
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 2.0e-88 330.1 218 71.1
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 2.0e-88 330.1 206 73.8
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 2.5e-88 329.7 207 72.0
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 2.5e-88 329.7 218 71.6
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 2.5e-88 329.7 218 70.6
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 2.5e-88 329.7 227 69.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 3.3e-88 329.3 207 71.5
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 3.3e-88 329.3 207 71.0
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 4.3e-88 328.9 176 81.8
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 5.7e-88 328.6 177 81.4
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 7.4e-88 328.2 242 65.7
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 9.7e-88 327.8 184 81.0
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 9.7e-88 327.8 207 72.5
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 1.3e-87 327.4 207 71.5
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 1.3e-87 327.4 207 71.5
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 1.3e-87 327.4 207 71.5
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 1.7e-87 327.0 228 68.0
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.2e-87 326.6 176 81.2
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 2.8e-87 326.2 207 73.4
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 1.1e-86 324.3 176 83.0
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 3.1e-86 322.8 173 83.8
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 3.1e-86 322.8 198 75.8
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.1e-86 322.4 230 68.3
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.2e-85 320.9 184 79.3
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 3.4e-85 319.3 220 69.5
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 6.5e-84 315.1 247 61.9
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 3.2e-83 312.8 256 60.5
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 3.2e-83 312.8 256 60.5
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 4.2e-83 312.4 176 79.0
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 3.6e-82 309.3 184 76.1
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 2.0e-80 303.5 196 75.0
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.0e-76 291.2 184 71.2
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 1.4e-73 280.8 154 82.5
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 5.7e-72 275.4 176 73.9
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.3e-68 264.2 296 48.6
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 6.5e-68 261.9 181 72.4
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.4e-65 254.2 187 68.4
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 1.0e-60 238.0 218 56.4
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 3.8e-60 236.1 129 89.1
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 8.5e-60 235.0 125 81.6
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 1.2e-56 224.6 203 55.7
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 2.0e-56 223.8 177 55.4
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 6.3e-55 218.8 113 88.5
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 6.3e-55 218.8 203 55.7
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 3.1e-54 216.5 126 78.6
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 1.0e-49 201.4 154 64.9
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.6e-43 179.1 89 93.3
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.6e-37 161.0 112 67.9
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 3.5e-37 159.8 81 87.7
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 1.3e-31 141.4 93 71.0
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.1e-30 138.3 86 70.9
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.1e-30 138.3 72 83.3
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 4.1e-30 136.3 79 77.2
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 6.6e-28 129.0 67 85.1
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 8.6e-28 128.6 75 84.0
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 1.1e-25 121.7 135 54.8
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 4.0e-25 119.8 57 89.5
Aqoxy7G02189 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 9.2e-22 108.6 146 42.5
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 1.5e-19 101.3 62 80.6
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 2.9e-15 87.0 83 44.6
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.8e-10 69.7 65 52.3
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 5.8e-08 62.8 41 73.2
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 2.2e-07 60.8 38 73.7


User provided reference genes

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