Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 7.9e-109 397.1 200 100.0
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 5.1e-92 341.3 187 92.0
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.3e-91 338.6 187 91.4
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.9e-86 322.8 187 84.5
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.5e-86 322.4 187 85.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 2.5e-86 322.4 187 84.5
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.2e-86 321.6 187 84.0
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 5.5e-86 321.2 187 84.5
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 5.5e-86 321.2 187 84.0
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 7.2e-86 320.9 187 84.0
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 7.2e-86 320.9 187 84.0
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.2e-85 320.1 188 84.6
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.1e-85 319.3 187 84.0
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.6e-85 318.5 187 82.9
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 7.9e-85 317.4 187 84.0
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.8e-84 316.2 187 83.4
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.3e-84 315.8 187 83.4
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 3.0e-84 315.5 187 82.4
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 3.0e-84 315.5 187 83.4
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.0e-84 315.5 187 82.4
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 3.9e-84 315.1 187 82.9
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 3.9e-84 315.1 187 84.0
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 3.9e-84 315.1 187 83.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 5.1e-84 314.7 187 83.4
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 5.1e-84 314.7 187 81.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 6.7e-84 314.3 187 82.4
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.1e-83 313.5 188 81.4
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.5e-83 313.2 187 82.4
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.5e-83 313.2 187 82.9
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.5e-83 313.2 187 81.8
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.5e-83 313.2 187 83.4
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.9e-83 312.8 187 81.8
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.9e-83 312.8 187 81.3
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 2.5e-83 312.4 187 82.4
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 3.3e-83 312.0 187 83.4
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 3.3e-83 312.0 187 82.4
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 4.3e-83 311.6 187 82.4
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 4.3e-83 311.6 187 81.3
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 5.7e-83 311.2 187 81.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 5.7e-83 311.2 187 81.3
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 7.4e-83 310.8 187 82.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 7.4e-83 310.8 187 82.4
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 7.4e-83 310.8 187 81.3
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 9.7e-83 310.5 187 81.3
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-82 310.1 187 83.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-82 310.1 187 82.9
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.6e-82 309.7 187 81.8
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 2.2e-82 309.3 187 80.7
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.2e-82 309.3 187 82.9
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.2e-82 309.3 187 82.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.2e-82 309.3 187 82.9
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 3.7e-82 308.5 187 82.9
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 4.8e-82 308.1 187 82.4
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.3e-82 307.8 187 80.7
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.3e-82 307.8 187 80.2
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 6.3e-82 307.8 187 81.3
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 6.3e-82 307.8 187 80.2
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 8.2e-82 307.4 187 81.8
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 8.2e-82 307.4 187 80.7
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 8.2e-82 307.4 187 81.8
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.1e-81 307.0 187 79.7
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.1e-81 307.0 187 80.7
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.1e-81 307.0 188 76.6
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.4e-81 306.6 187 80.2
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.8e-81 306.2 187 80.2
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 2.4e-81 305.8 187 79.7
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 4.1e-81 305.1 187 80.7
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.1e-81 305.1 187 76.5
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 5.3e-81 304.7 186 82.3
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 6.9e-81 304.3 187 80.7
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 9.1e-81 303.9 187 78.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 9.1e-81 303.9 187 78.6
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 9.1e-81 303.9 187 80.2
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.2e-80 303.5 187 79.1
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.5e-80 303.1 187 79.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.0e-80 302.8 187 79.1
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 2.6e-80 302.4 187 78.6
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.6e-80 302.4 187 78.6
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 3.4e-80 302.0 187 79.1
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.4e-80 302.0 187 79.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 3.4e-80 302.0 187 79.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 3.4e-80 302.0 187 79.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 3.4e-80 302.0 187 79.1
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.4e-80 302.0 187 79.1
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.4e-80 302.0 187 79.1
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.4e-80 302.0 195 77.4
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 5.9e-80 301.2 187 78.6
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.0e-79 300.4 211 73.0
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 6.5e-79 297.7 188 75.0
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.1e-78 297.0 192 77.6
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 2.1e-77 292.7 171 83.0
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.1e-77 292.7 171 83.0
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 6.1e-77 291.2 187 79.1
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 3.9e-76 288.5 188 73.4
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 6.7e-76 287.7 234 67.1
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.5e-75 286.6 187 77.0
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.3e-74 283.5 234 63.2
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.8e-73 279.6 186 73.1
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 4.1e-73 278.5 187 73.8
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.2e-72 276.9 187 74.9
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.5e-72 276.6 182 75.3
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.9e-71 272.3 298 52.7
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.4e-70 270.0 187 71.7
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 3.9e-68 261.9 187 72.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 2.0e-67 259.6 189 69.8
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.8e-65 253.1 165 76.4
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.5e-64 248.8 161 77.6
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 7.7e-64 247.7 151 79.5
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.9e-63 245.7 152 77.0
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.3e-58 230.3 174 67.8
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.8e-57 226.5 187 64.7
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 2.7e-56 222.6 145 75.9
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.7e-56 222.6 187 56.1
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 8.5e-55 217.6 186 56.5
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 5.4e-49 198.4 187 59.9
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.5e-46 190.3 118 80.5
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.7e-45 185.3 99 87.9
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 7.3e-38 161.4 121 67.8
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.6e-37 160.2 190 48.4
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.7e-32 142.9 153 56.2
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 6.0e-32 141.7 207 37.2
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 2.3e-28 129.8 137 54.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 5.8e-27 125.2 95 69.5
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 5.6e-22 108.6 187 40.1
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.3e-18 97.4 62 77.4
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 5.4e-17 92.0 51 88.2
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 6.6e-15 85.1 55 76.4
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 4.3e-14 82.4 135 43.7
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.8e-12 77.0 44 77.3
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 7.6e-11 71.6 56 58.9
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 7.6e-11 71.6 55 72.7
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 9.2e-09 64.7 37 81.1
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.1e-08 63.5 37 78.4
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 2.7e-08 63.2 51 64.7
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 2.7e-08 63.2 30 90.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 5.1e-07 58.9 36 80.6


User provided reference genes

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