Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb102630 Zea mays HOM05D005828 ORTHO05D006822 1.6e-43 179.1 95 100.0
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 2.7e-27 125.2 94 73.4
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 4.0e-26 121.3 93 72.0
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 3.6e-19 98.2 95 63.2
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 1.0e-18 96.7 80 67.5
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 1.0e-18 96.7 80 66.2
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 1.0e-18 96.7 85 63.5
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 1.4e-18 96.3 85 64.7
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 1.4e-18 96.3 91 62.6
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 1.4e-18 96.3 91 62.6
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 1.4e-18 96.3 91 62.6
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 1.4e-18 96.3 85 63.5
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 1.4e-18 96.3 85 64.7
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 1.8e-18 95.9 80 66.2
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 1.8e-18 95.9 84 63.1
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 4.0e-18 94.7 89 61.8
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 4.0e-18 94.7 85 62.4
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 4.0e-18 94.7 88 62.5
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 4.0e-18 94.7 88 62.5
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 5.2e-18 94.4 92 58.7
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 5.2e-18 94.4 85 64.7
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 5.2e-18 94.4 84 63.1
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 6.8e-18 94.0 83 63.9
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 6.8e-18 94.0 83 63.9
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 8.8e-18 93.6 85 63.5
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 8.8e-18 93.6 78 65.4
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 8.8e-18 93.6 83 61.4
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 1.2e-17 93.2 80 63.8
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 1.5e-17 92.8 89 60.7
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 1.5e-17 92.8 87 62.1
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 1.5e-17 92.8 81 61.7
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 2.0e-17 92.4 86 62.8
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 2.0e-17 92.4 79 64.6
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 2.0e-17 92.4 86 61.6
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 2.6e-17 92.0 79 64.6
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 2.6e-17 92.0 88 62.5
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 2.6e-17 92.0 87 62.1
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 2.6e-17 92.0 88 60.2
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 3.4e-17 91.7 96 58.3
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 3.4e-17 91.7 85 62.4
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 3.4e-17 91.7 81 61.7
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 4.4e-17 91.3 84 65.5
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 4.4e-17 91.3 88 62.5
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 4.4e-17 91.3 85 63.5
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 4.4e-17 91.3 88 62.5
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 4.4e-17 91.3 85 61.2
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 5.7e-17 90.9 85 63.5
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 5.7e-17 90.9 82 61.0
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 5.7e-17 90.9 86 62.8
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 7.5e-17 90.5 74 67.6
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 9.8e-17 90.1 86 64.0
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 9.8e-17 90.1 84 60.7
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 9.8e-17 90.1 83 60.2
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 1.3e-16 89.7 80 63.8
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.3e-16 89.7 80 63.8
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 1.3e-16 89.7 86 61.6
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.7e-16 89.4 73 65.8
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 2.2e-16 89.0 86 59.3
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 2.8e-16 88.6 77 61.0
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 2.8e-16 88.6 73 67.1
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 3.7e-16 88.2 78 59.0
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 3.7e-16 88.2 88 60.2
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 3.7e-16 88.2 80 61.2
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 6.3e-16 87.4 76 64.5
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 8.3e-16 87.0 93 58.1
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 1.1e-15 86.7 87 58.6
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 1.1e-15 86.7 85 58.8
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.1e-15 86.7 76 63.2
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 1.8e-15 85.9 80 58.8
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 1.8e-15 85.9 80 58.8
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 1.8e-15 85.9 71 66.2
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 1.8e-15 85.9 71 66.2
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 3.1e-15 85.1 72 62.5
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 3.1e-15 85.1 76 63.2
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 3.1e-15 85.1 72 62.5
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-15 84.7 80 57.5
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-15 84.7 80 57.5
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-15 84.7 80 57.5
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 4.1e-15 84.7 80 57.5
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 4.1e-15 84.7 80 57.5
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 4.1e-15 84.7 76 61.8
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 5.4e-15 84.3 80 61.2
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 5.4e-15 84.3 74 58.1
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 7.0e-15 84.0 86 57.0
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 7.0e-15 84.0 73 60.3
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 9.1e-15 83.6 97 54.6
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.2e-14 83.2 71 62.0
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 1.2e-14 83.2 71 62.0
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 1.2e-14 83.2 86 53.5
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 2.0e-14 82.4 74 62.2
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 4.5e-14 81.3 87 54.0
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 4.5e-14 81.3 87 54.0
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 4.5e-14 81.3 85 52.9
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 4.5e-14 81.3 85 52.9
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 4.5e-14 81.3 85 52.9
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 4.5e-14 81.3 97 53.6
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 5.9e-14 80.9 71 60.6
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 7.7e-14 80.5 88 56.8
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 7.7e-14 80.5 89 51.7
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 1.0e-13 80.1 74 58.1
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 5.0e-13 77.8 68 60.3
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 5.0e-13 77.8 89 55.1
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 6.5e-13 77.4 68 60.3
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 1.1e-12 76.6 70 64.3
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 1.9e-12 75.9 76 59.2
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 3.2e-12 75.1 79 59.5
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 4.2e-12 74.7 79 59.5
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 4.2e-12 74.7 78 61.5
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 7.2e-12 73.9 88 55.7
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 1.6e-11 72.8 90 55.6
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 2.1e-11 72.4 96 49.0
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 2.8e-11 72.0 77 57.1
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 2.8e-11 72.0 62 66.1
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 4.7e-11 71.2 62 61.3
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 4.7e-11 71.2 65 61.5
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.0e-10 70.1 62 64.5
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 1.2e-09 66.6 78 56.4
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 2.6e-09 65.5 56 62.5
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 3.4e-09 65.1 72 50.0
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 4.9e-08 61.2 84 47.6
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 4.1e-07 58.2 66 53.0
MD03G1196900 Malus domestica HOM05D005828 ORTHO05D006822 1.6e-06 56.2 49 61.2


User provided reference genes

Program Settings