Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 7.8e-120 433.7 206 100.0
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.3e-114 416.4 206 94.7
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 2.0e-91 339.3 169 94.1
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.2e-90 335.9 204 78.4
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.9e-90 335.5 204 78.9
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.4e-89 333.2 203 78.3
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 2.4e-89 332.4 206 76.2
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 4.2e-89 331.6 203 75.9
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 5.5e-89 331.3 203 76.4
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.6e-88 329.7 203 75.9
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 2.1e-88 329.3 204 77.0
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.1e-88 329.3 205 75.6
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 4.6e-88 328.2 198 78.3
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 7.9e-88 327.4 204 77.9
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 7.9e-88 327.4 202 77.7
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.0e-87 327.0 203 75.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.0e-87 327.0 205 76.1
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 1.0e-87 327.0 205 76.1
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 2.3e-87 325.9 201 76.6
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 3.0e-87 325.5 203 74.9
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 3.0e-87 325.5 206 75.2
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 3.0e-87 325.5 204 75.5
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 5.1e-87 324.7 204 75.0
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 5.1e-87 324.7 206 75.7
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 5.1e-87 324.7 206 75.7
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 5.1e-87 324.7 199 75.9
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 5.1e-87 324.7 206 77.2
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 8.7e-87 323.9 199 77.4
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 8.7e-87 323.9 204 75.0
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 8.7e-87 323.9 204 75.5
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 1.1e-86 323.6 198 78.3
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.5e-86 323.2 199 77.9
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.5e-86 323.2 204 75.0
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 2.5e-86 322.4 204 74.5
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 2.5e-86 322.4 201 76.1
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.3e-86 322.0 198 78.3
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.3e-86 322.0 198 78.3
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 4.3e-86 321.6 204 75.5
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 4.3e-86 321.6 206 75.2
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 4.3e-86 321.6 198 77.8
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 4.3e-86 321.6 204 76.0
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 7.4e-86 320.9 201 77.1
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 7.4e-86 320.9 199 76.4
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 7.4e-86 320.9 198 76.3
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 7.4e-86 320.9 206 74.3
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 7.4e-86 320.9 199 76.4
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 7.4e-86 320.9 204 73.0
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 7.4e-86 320.9 205 75.1
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.3e-85 320.1 201 75.6
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 1.3e-85 320.1 198 77.8
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.6e-85 319.7 205 75.1
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 3.7e-85 318.5 199 75.9
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 6.2e-85 317.8 206 73.3
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 8.2e-85 317.4 198 76.8
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 8.2e-85 317.4 205 75.6
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 8.2e-85 317.4 205 74.6
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.4e-84 316.6 203 73.9
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.8e-84 316.2 205 74.6
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 4.0e-84 315.1 204 74.5
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 5.3e-84 314.7 204 74.5
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 5.3e-84 314.7 200 75.5
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 5.3e-84 314.7 198 74.7
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 6.9e-84 314.3 206 73.3
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 9.0e-84 313.9 200 75.5
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 9.0e-84 313.9 198 74.7
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 9.0e-84 313.9 207 71.0
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 1.2e-83 313.5 205 72.2
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.2e-83 313.5 204 72.5
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.0e-83 312.8 216 73.1
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.0e-83 312.8 205 74.6
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 2.6e-83 312.4 205 72.7
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 2.6e-83 312.4 206 72.8
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 4.5e-83 311.6 204 75.0
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 5.8e-83 311.2 198 76.3
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 5.8e-83 311.2 205 72.2
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 1.0e-82 310.5 204 73.5
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.0e-82 310.5 198 74.7
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 1.7e-82 309.7 205 73.2
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.2e-82 309.3 198 74.7
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.9e-82 308.1 198 75.3
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 6.5e-82 307.8 205 70.7
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.1e-81 307.0 206 72.3
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.9e-81 306.2 198 73.7
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.5e-81 305.8 200 73.5
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.5e-81 305.8 200 73.5
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 2.5e-81 305.8 205 72.2
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 3.2e-81 305.4 204 73.0
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 5.5e-81 304.7 205 72.2
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 5.5e-81 304.7 198 73.7
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 5.5e-81 304.7 204 72.5
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.1e-81 304.3 198 73.7
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.2e-80 303.5 198 75.8
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 3.5e-80 302.0 206 71.4
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.3e-79 300.1 195 72.8
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.8e-79 299.7 198 74.7
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.8e-79 299.7 198 73.7
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 2.3e-79 299.3 231 64.1
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 3.0e-79 298.9 199 71.9
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 6.7e-79 297.7 198 73.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 6.5e-74 281.2 183 73.2
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 1.3e-69 266.9 201 65.2
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 1.2e-67 260.4 174 71.8
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 2.6e-67 259.2 199 62.8
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 5.9e-67 258.1 198 65.7
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 1.3e-66 256.9 163 74.8
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 1.1e-65 253.8 204 57.8
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 3.2e-65 252.3 198 61.1
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.4e-63 246.9 208 58.7
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 6.3e-61 238.0 159 69.8
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 6.9e-60 234.6 119 91.6
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 6.9e-60 234.6 119 90.8
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.2e-59 233.8 199 55.8
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.1e-57 227.3 199 58.8
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.1e-57 227.3 199 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 1.4e-57 226.9 199 53.8
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 5.5e-57 224.9 143 75.5
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.3e-55 219.5 199 57.3
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 6.7e-55 218.0 143 74.1
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 9.7e-54 214.2 130 76.2
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 2.7e-48 196.1 124 71.8
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.4e-46 188.7 148 65.5
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 4.4e-46 188.7 148 64.9
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.5e-41 173.7 155 58.1
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 4.4e-38 162.2 97 77.3
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 5.4e-36 155.2 169 50.3
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 4.2e-33 145.6 94 74.5
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 2.4e-28 129.8 202 38.6
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.4e-23 114.0 199 39.7
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.6e-22 109.8 103 56.3
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.3e-21 107.5 75 70.7
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 2.9e-21 106.3 75 68.0
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.1e-20 104.4 62 77.4
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 7.8e-19 98.2 75 68.0
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 1.1e-12 77.8 37 94.6
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 8.6e-10 68.2 36 86.1
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 5.6e-09 65.5 41 70.7
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 6.2e-08 62.0 35 82.9
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 6.8e-07 58.5 37 70.3


User provided reference genes

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