Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb102460 Zea mays HOM05D003418 ORTHO05D004105 1.3e-67 259.6 132 100.0
Os09g0507400 Oryza sativa ssp. japonica HOM05D003418 ORTHO05D004105 1.7e-30 136.3 114 69.3
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 4.5e-20 101.7 127 46.5
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 1.1e-18 97.1 119 50.4
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 1.4e-18 96.7 125 46.4
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 1.6e-17 93.2 95 54.7
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 3.6e-17 92.0 146 41.8
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 4.7e-17 91.7 112 48.2
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 6.1e-17 91.3 129 41.1
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 8.0e-17 90.9 113 46.9
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.0e-16 90.5 123 45.5
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 1.4e-16 90.1 102 51.0
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 2.3e-16 89.4 122 45.1
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 3.9e-16 88.6 101 49.5
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 3.9e-16 88.6 128 43.0
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 8.8e-16 87.4 130 40.8
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 1.1e-15 87.0 109 47.7
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 2.6e-15 85.9 139 42.4
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 3.3e-15 85.5 125 41.6
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 3.3e-15 85.5 127 47.2
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 4.4e-15 85.1 102 49.0
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 4.4e-15 85.1 115 47.0
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 7.4e-15 84.3 98 48.0
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 9.7e-15 84.0 126 43.7
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 1.3e-14 83.6 133 38.3
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 1.7e-14 83.2 117 45.3
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 1.7e-14 83.2 93 50.5
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 2.2e-14 82.8 122 45.9
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 2.2e-14 82.8 126 39.7
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 2.2e-14 82.8 130 39.2
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 2.2e-14 82.8 107 48.6
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 2.2e-14 82.8 114 46.5
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 2.8e-14 82.4 126 41.3
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 2.8e-14 82.4 145 39.3
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 3.7e-14 82.0 130 42.3
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 3.7e-14 82.0 138 40.6
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 3.7e-14 82.0 133 38.3
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.8e-14 81.6 126 42.1
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 4.8e-14 81.6 112 45.5
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 4.8e-14 81.6 130 42.3
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 4.8e-14 81.6 130 42.3
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 6.3e-14 81.3 141 35.5
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 6.3e-14 81.3 126 43.7
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 6.3e-14 81.3 104 46.2
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 8.2e-14 80.9 111 44.1
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 8.2e-14 80.9 129 41.9
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 8.2e-14 80.9 120 44.2
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 8.2e-14 80.9 106 47.2
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 1.1e-13 80.5 138 39.1
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.1e-13 80.5 99 47.5
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 1.1e-13 80.5 123 41.5
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 1.1e-13 80.5 128 41.4
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 1.4e-13 80.1 117 46.2
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 1.4e-13 80.1 130 40.8
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 1.4e-13 80.1 131 39.7
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 1.4e-13 80.1 137 40.1
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.8e-13 79.7 129 42.6
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 1.8e-13 79.7 131 38.2
Zm00001eb364310 Zea mays HOM05D003418 ORTHO05D011080 1.8e-13 79.7 87 56.3
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 2.4e-13 79.3 143 39.2
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 2.4e-13 79.3 131 39.7
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 2.4e-13 79.3 134 41.8
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 2.4e-13 79.3 120 41.7
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 3.1e-13 79.0 119 41.2
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 3.1e-13 79.0 103 46.6
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 3.1e-13 79.0 134 41.0
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 3.1e-13 79.0 118 42.4
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 3.1e-13 79.0 113 43.4
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 3.1e-13 79.0 137 43.1
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 3.1e-13 79.0 106 47.2
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 3.1e-13 79.0 123 41.5
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 4.1e-13 78.6 137 36.5
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 4.1e-13 78.6 104 48.1
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 5.3e-13 78.2 105 47.6
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 5.3e-13 78.2 139 36.7
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 5.3e-13 78.2 132 39.4
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 7.0e-13 77.8 108 47.2
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 7.0e-13 77.8 108 47.2
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 7.0e-13 77.8 136 39.7
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 7.0e-13 77.8 133 40.6
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 7.0e-13 77.8 100 49.0
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 7.0e-13 77.8 93 50.5
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 7.0e-13 77.8 138 40.6
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 7.0e-13 77.8 133 40.6
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 9.1e-13 77.4 132 40.2
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 9.1e-13 77.4 130 39.2
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 9.1e-13 77.4 139 38.8
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 9.1e-13 77.4 145 37.9
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 9.1e-13 77.4 114 42.1
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 1.2e-12 77.0 117 41.0
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 1.2e-12 77.0 127 40.2
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 1.2e-12 77.0 119 42.9
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 1.6e-12 76.6 130 40.8
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 1.6e-12 76.6 131 38.9
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 1.6e-12 76.6 112 43.8
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 2.0e-12 76.3 136 39.0
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 2.6e-12 75.9 140 35.7
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 2.6e-12 75.9 112 43.8
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 3.5e-12 75.5 124 41.1
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 3.5e-12 75.5 122 38.5
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 4.5e-12 75.1 110 40.0
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 4.5e-12 75.1 113 36.3
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 4.5e-12 75.1 130 36.9
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 5.9e-12 74.7 127 37.8
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 5.9e-12 74.7 123 40.7
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 5.9e-12 74.7 95 46.3
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 5.9e-12 74.7 72 56.9
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 5.9e-12 74.7 110 40.9
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 7.7e-12 74.3 137 39.4
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 7.7e-12 74.3 124 41.9
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 7.7e-12 74.3 132 36.4
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 1.0e-11 73.9 128 39.1
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 1.3e-11 73.6 110 39.1
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.3e-11 73.6 122 38.5
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.3e-11 73.6 122 39.3
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.3e-11 73.6 122 38.5
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.3e-11 73.6 131 38.2
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.3e-11 73.6 131 38.2
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.3e-11 73.6 131 38.2
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 1.7e-11 73.2 134 38.8
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.7e-11 73.2 93 44.1
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 2.2e-11 72.8 107 44.9
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 2.2e-11 72.8 127 38.6
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 2.9e-11 72.4 132 39.4
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 2.9e-11 72.4 134 38.8
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 2.9e-11 72.4 114 42.1
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 2.9e-11 72.4 115 42.6
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.9e-11 72.4 110 42.7
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 2.9e-11 72.4 109 40.4
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 3.8e-11 72.0 110 39.1
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 3.8e-11 72.0 114 42.1
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 5.0e-11 71.6 72 54.2
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 5.0e-11 71.6 112 39.3
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 6.5e-11 71.2 111 41.4
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 6.5e-11 71.2 111 41.4
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 8.5e-11 70.9 129 37.2
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 8.5e-11 70.9 153 36.6
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 8.5e-11 70.9 134 38.1
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 8.5e-11 70.9 121 38.8
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 8.5e-11 70.9 107 41.1
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 8.5e-11 70.9 126 40.5
unitig_26.g10403 Utricularia gibba HOM05D003418 ORTHO05D004105 8.5e-11 70.9 104 42.3
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.5e-10 70.1 93 43.0
CDE02G2290 Ceratophyllum demersum HOM05D003418 ORTHO05D004105 1.9e-10 69.7 133 36.8
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 1.9e-10 69.7 101 46.5
unitig_749.g13308 Utricularia gibba HOM05D003418 ORTHO05D004105 1.9e-10 69.7 95 45.3
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 2.5e-10 69.3 116 42.2
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 2.5e-10 69.3 127 37.8
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 3.2e-10 68.9 120 38.3
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 3.2e-10 68.9 126 34.9
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 3.2e-10 68.9 128 35.2
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.2e-10 68.6 110 40.0
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 4.2e-10 68.6 83 44.6
Os01g0923000 Oryza sativa ssp. japonica HOM05D003418 ORTHO05D049845 5.5e-10 68.2 86 47.7
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 5.5e-10 68.2 118 37.3
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.2e-09 67.0 95 41.1
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 1.2e-09 67.0 84 46.4
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 2.1e-09 66.2 127 37.8
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 6.1e-09 64.7 136 37.5
Ah.03g136010 Amaranthus hybridus HOM05D003418 ORTHO05D004105 1.0e-08 63.9 91 40.7
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 1.0e-08 63.9 131 31.3
Peaxi162Scf00518g00025 Petunia axillaris HOM05D003418 ORTHO05D004105 1.4e-08 63.5 136 34.6
Zm00001eb141250 Zea mays HOM05D003418 ORTHO05D049845 5.2e-08 61.6 88 48.9
Aqoxy5G03322 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 6.7e-08 61.2 85 41.2
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 6.7e-08 61.2 121 38.0
Migut.E00007 Erythranthe guttata HOM05D003418 ORTHO05D004105 8.8e-08 60.8 110 38.2
SGA_v2.0_scaffold391G50621 Striga asiatica HOM05D003418 ORTHO05D004105 8.8e-08 60.8 119 35.3
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 2.6e-07 59.3 107 34.6
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 5.7e-07 58.2 108 37.0
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 5.7e-07 58.2 108 38.0
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 7.5e-07 57.8 106 34.9
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 7.5e-07 57.8 106 34.9
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 2.8e-06 55.8 59 49.2
SEGI_34361 Sequoiadendron giganteum HOM05D003418 ORTHO05D004105 2.8e-06 55.8 87 37.9
Ah.02g130820 Amaranthus hybridus HOM05D000660 ORTHO05D000766 3.7e-06 55.5 120 32.5
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 3.7e-06 55.5 125 36.0
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 4.8e-06 55.1 107 37.4
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 6.3e-06 54.7 106 34.0
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 8.2e-06 54.3 58 55.2


User provided reference genes

Program Settings