Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 5.2e-170 600.9 291 100.0
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 5.0e-80 302.0 183 80.9
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.8e-45 185.3 208 48.6
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 2.6e-44 183.3 203 49.3
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 3.4e-44 183.0 201 50.2
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 5.8e-44 182.2 203 48.8
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 3.7e-43 179.5 220 46.4
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 4.1e-42 176.0 160 53.1
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 2.7e-41 173.3 202 46.5
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 7.8e-41 171.8 180 48.3
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 7.8e-41 171.8 215 42.3
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 1.7e-40 170.6 120 65.0
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 1.7e-40 170.6 120 65.0
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 1.7e-40 170.6 166 50.0
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.3e-40 170.2 207 47.8
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 3.0e-40 169.9 154 53.2
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 3.9e-40 169.5 216 44.9
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 5.1e-40 169.1 217 42.9
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 5.1e-40 169.1 110 64.5
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 6.6e-40 168.7 212 44.3
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 1.9e-39 167.2 214 43.0
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 2.5e-39 166.8 184 47.8
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 4.3e-39 166.0 196 45.9
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.2e-38 164.5 191 49.2
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 1.2e-38 164.5 191 49.2
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 1.6e-38 164.1 207 45.4
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.6e-38 164.1 203 45.8
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 2.1e-38 163.7 212 43.9
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 2.8e-38 163.3 194 45.4
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 3.6e-38 162.9 191 50.3
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 4.7e-38 162.5 216 42.6
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.2e-38 162.2 108 62.0
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 1.1e-37 161.4 205 43.4
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.8e-37 160.6 213 43.2
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 1.8e-37 160.6 204 44.6
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 2.4e-37 160.2 218 44.0
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 4.0e-37 159.5 191 48.2
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 6.8e-37 158.7 188 48.4
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 6.8e-37 158.7 194 44.3
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 6.8e-37 158.7 201 43.8
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 8.9e-37 158.3 191 47.1
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 8.9e-37 158.3 188 48.4
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 8.9e-37 158.3 190 46.3
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 1.5e-36 157.5 189 49.7
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.5e-36 157.5 200 47.0
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 2.6e-36 156.8 202 44.1
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 4.4e-36 156.0 197 43.7
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 4.4e-36 156.0 191 47.6
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 9.9e-36 154.8 189 49.2
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 1.3e-35 154.5 191 47.6
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 4.9e-35 152.5 97 63.9
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 6.4e-35 152.1 202 41.1
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 8.4e-35 151.8 200 42.0
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 8.4e-35 151.8 126 54.8
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.4e-34 151.0 201 44.8
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 1.4e-34 151.0 100 62.0
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.2e-33 147.9 98 67.3
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 1.7e-32 144.1 110 56.4
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 1.7e-32 144.1 142 48.6
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 3.0e-32 143.3 110 56.4
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 5.1e-32 142.5 181 42.0
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 5.1e-32 142.5 130 53.1
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 5.1e-32 142.5 179 44.7
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 8.7e-32 141.7 119 52.1
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 1.9e-31 140.6 226 38.5
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 1.9e-31 140.6 209 41.6
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.9e-31 140.6 213 39.4
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 4.3e-31 139.4 210 40.5
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 5.6e-31 139.0 192 41.7
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 7.3e-31 138.7 206 39.3
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.6e-30 137.5 113 54.0
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 1.6e-30 137.5 210 39.5
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 2.1e-30 137.1 186 42.5
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 2.8e-30 136.7 216 39.8
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 2.8e-30 136.7 186 40.9
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 4.8e-30 136.0 191 40.8
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 6.2e-30 135.6 113 50.4
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 8.1e-30 135.2 182 41.2
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.4e-29 134.4 186 39.2
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 1.4e-29 134.4 112 51.8
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 1.8e-29 134.0 211 37.9
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.4e-29 133.7 91 58.2
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 3.1e-29 133.3 227 35.7
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 3.1e-29 133.3 179 43.6
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 3.1e-29 133.3 183 40.4
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 5.3e-29 132.5 204 36.8
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 1.5e-28 131.0 151 41.7
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.6e-28 130.2 87 58.6
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 7.6e-28 128.6 202 38.6
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.7e-27 127.5 169 43.2
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 2.2e-27 127.1 113 48.7
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 2.2e-27 127.1 178 43.3
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 8.4e-27 125.2 113 46.9
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 1.1e-26 124.8 199 38.2
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.1e-26 124.8 166 42.8
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 2.4e-26 123.6 113 48.7
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 5.4e-26 122.5 75 65.3
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 4.6e-25 119.4 124 49.2
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 7.8e-25 118.6 107 49.5
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 6.6e-24 115.5 111 47.7
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 8.7e-24 115.2 105 46.7
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.9e-23 114.0 92 51.1
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 6.9e-21 105.5 121 42.1
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.9e-21 105.5 68 64.7
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.2e-20 104.8 101 51.5
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 1.1e-13 81.6 75 50.7
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 1.8e-13 80.9 208 34.1
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 1.5e-12 77.8 67 52.2
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.2e-11 73.9 74 50.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.1e-09 67.4 112 37.5
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 1.5e-07 61.2 124 41.1
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 2.8e-06 57.0 50 50.0


User provided reference genes

Program Settings