Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 2.2e-82 308.9 154 100.0
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 1.2e-48 196.8 133 78.9
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.2e-24 117.1 135 52.6
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.3e-10 70.5 35 71.4
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 5.5e-09 65.1 59 49.2
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 2.1e-08 63.2 33 75.8
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 2.1e-08 63.2 32 71.9
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 2.1e-08 63.2 32 71.9
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 2.1e-08 63.2 32 71.9
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 2.1e-08 63.2 53 54.7
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 2.1e-08 63.2 91 41.8
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 4.6e-08 62.0 33 72.7
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 6.0e-08 61.6 58 44.8
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 6.0e-08 61.6 32 68.8
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 6.0e-08 61.6 32 68.8
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 6.0e-08 61.6 32 68.8
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 7.9e-08 61.2 38 65.8
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 1.0e-07 60.8 33 69.7
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 1.0e-07 60.8 31 74.2
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 1.0e-07 60.8 31 74.2
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 1.8e-07 60.1 51 58.8
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 1.8e-07 60.1 33 66.7
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.3e-07 59.7 36 61.1
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.3e-07 59.7 36 61.1
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 2.3e-07 59.7 61 45.9
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 2.3e-07 59.7 31 71.0
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 3.0e-07 59.3 32 68.8
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 3.0e-07 59.3 34 64.7
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 3.0e-07 59.3 31 71.0
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 5.1e-07 58.5 33 66.7
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 5.1e-07 58.5 45 51.1
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 5.1e-07 58.5 31 67.7
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 5.1e-07 58.5 33 66.7
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 6.7e-07 58.2 31 67.7
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 6.7e-07 58.2 32 68.8
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 6.7e-07 58.2 32 68.8
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 8.7e-07 57.8 44 56.8
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 8.7e-07 57.8 59 45.8
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 8.7e-07 57.8 34 61.8
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 8.7e-07 57.8 46 52.2
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 1.1e-06 57.4 33 63.6
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 1.5e-06 57.0 36 58.3
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 1.5e-06 57.0 31 71.0
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 1.5e-06 57.0 30 70.0
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 1.5e-06 57.0 31 71.0
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 1.5e-06 57.0 31 71.0
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 1.9e-06 56.6 31 67.7
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 2.5e-06 56.2 59 44.1
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 3.3e-06 55.8 36 58.3
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 3.3e-06 55.8 31 67.7
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 3.3e-06 55.8 34 61.8
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 3.3e-06 55.8 34 58.8
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 4.3e-06 55.5 33 63.6
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 4.3e-06 55.5 33 63.6
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 4.3e-06 55.5 33 63.6
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 4.3e-06 55.5 33 63.6
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 4.3e-06 55.5 33 63.6
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 4.3e-06 55.5 30 70.0
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 4.3e-06 55.5 29 69.0
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 5.6e-06 55.1 29 69.0
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 5.6e-06 55.1 45 51.1
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 5.6e-06 55.1 67 47.8
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 7.4e-06 54.7 30 66.7
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 7.4e-06 54.7 29 69.0
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 7.4e-06 54.7 29 69.0
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 9.6e-06 54.3 46 52.2
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 9.6e-06 54.3 29 69.0
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 9.6e-06 54.3 29 69.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 9.6e-06 54.3 62 40.3


User provided reference genes

Program Settings