Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb100650 Zea mays HOM05D000291 ORTHO05D003931 2.5e-105 385.6 211 100.0
Os08g0467300 Oryza sativa ssp. japonica HOM05D000291 ORTHO05D003931 7.7e-38 161.4 218 45.4
Zm00001eb037740 Zea mays HOM05D000291 ORTHO05D003931 1.7e-32 143.7 208 42.8
Zm00001eb176420 Zea mays HOM05D000291 ORTHO05D003931 9.1e-31 137.9 140 53.6
HPP92_026208 Vanilla planifolia HOM05D000291 ORTHO05D003931 7.9e-27 124.8 202 39.1
HPP92_016169 Vanilla planifolia HOM05D000291 ORTHO05D003931 3.0e-26 122.9 202 38.6
HPP92_019341 Vanilla planifolia HOM05D000291 ORTHO05D003931 1.5e-25 120.6 189 40.2
Aqoxy3G04001 Aquilegia oxysepala HOM05D000291 ORTHO05D003931 1.2e-22 110.9 202 37.6
MBI19_g21089_MAGBIO Magnolia biondii HOM05D000291 ORTHO05D003931 2.6e-22 109.8 184 37.5
MBI19_g42368_MAGBIO Magnolia biondii HOM05D000291 ORTHO05D003931 2.6e-22 109.8 184 37.5
ATR0598G210 Amborella trichopoda HOM05D000291 ORTHO05D003931 4.5e-22 109.0 118 49.2
Ciclev10017634m.g Citrus clementina HOM05D000291 ORTHO05D003931 1.3e-21 107.5 194 34.5
Atru.chr11.1000 Acer truncatum HOM05D000291 ORTHO05D003931 1.7e-21 107.1 172 36.0
TAR629G1121 Trochodendron aralioides HOM05D000291 ORTHO05D003931 3.8e-21 105.9 207 37.7
Nn4g24569 Nelumbo nucifera HOM05D000291 ORTHO05D003931 5.0e-21 105.5 176 38.6
TAR622G1381 Trochodendron aralioides HOM05D000291 ORTHO05D003931 6.5e-21 105.1 172 39.0
Gohir.D02G137600 Gossypium hirsutum HOM05D000291 ORTHO05D003931 1.1e-20 104.4 174 37.4
Thecc.02G303300 Theobroma cacao HOM05D000291 ORTHO05D003931 2.5e-20 103.2 203 36.9
Gorai.005G154100 Gossypium raimondii HOM05D000291 ORTHO05D003931 3.2e-20 102.8 174 36.8
PSO210G6756 Papaver somniferum HOM05D000291 ORTHO05D003931 4.2e-20 102.4 172 40.1
Gohir.A04G143700 Gossypium hirsutum HOM05D000291 ORTHO05D003931 9.4e-20 101.3 170 33.5
Peaxi162Scf00033g00202 Petunia axillaris HOM05D000291 ORTHO05D003931 1.2e-19 100.9 171 36.3
Cpa.g.sc2.122 Carica papaya HOM05D000291 ORTHO05D003931 1.6e-19 100.5 171 33.9
Nn3g18476 Nelumbo nucifera HOM05D000291 ORTHO05D003931 1.6e-19 100.5 178 34.8
Hma1.2p1_1525F.1_g288910 Hydrangea macrophylla HOM05D000291 ORTHO05D003931 2.1e-19 100.1 198 32.8
Gohir.D04G188000 Gossypium hirsutum HOM05D000291 ORTHO05D003931 3.6e-19 99.4 171 35.1
Gorai.012G183400 Gossypium raimondii HOM05D000291 ORTHO05D003931 4.7e-19 99.0 171 35.7
CAN.G282.101 Capsicum annuum HOM05D000291 ORTHO05D003931 6.1e-19 98.6 125 43.2
Gohir.A01G143000 Gossypium hirsutum HOM05D000291 ORTHO05D003931 8.0e-19 98.2 123 43.1
Duzib251G0787 Durio zibethinus HOM05D000291 ORTHO05D003931 1.0e-18 97.8 176 36.9
PSO832G1200 Papaver somniferum HOM05D000291 ORTHO05D003931 1.0e-18 97.8 172 39.5
Gohir.D01G134900 Gossypium hirsutum HOM05D000291 ORTHO05D003931 1.4e-18 97.4 123 43.1
Lj3P859T32 Lonicera japonica HOM05D000291 ORTHO05D003931 1.4e-18 97.4 193 33.7
Lj6P731T43 Lonicera japonica HOM05D000291 ORTHO05D003931 1.4e-18 97.4 181 34.8
Cfa022223 Carpinus fangiana HOM05D000291 ORTHO05D003931 1.8e-18 97.1 193 31.1
DCAR_002651 Daucus carota HOM05D000291 ORTHO05D003931 2.3e-18 96.7 171 32.2
THA.LOC104821910 Tarenaya hassleriana HOM05D000291 ORTHO05D003931 2.3e-18 96.7 118 40.7
Lj4g0010872 Lotus japonicus HOM05D000291 ORTHO05D003931 3.0e-18 96.3 171 34.5
AL1G40120 Arabidopsis lyrata HOM05D000291 ORTHO05D003931 6.7e-18 95.1 118 42.4
CARHR026320 Cardamine hirsuta HOM05D000291 ORTHO05D003931 6.7e-18 95.1 131 38.9
Glyma.05G137200 Glycine max HOM05D000291 ORTHO05D003931 6.7e-18 95.1 203 32.5
Glyma.08G092500 Glycine max HOM05D000291 ORTHO05D003931 6.7e-18 95.1 204 31.4
Gorai.002G171300 Gossypium raimondii HOM05D000291 ORTHO05D003931 8.8e-18 94.7 172 33.1
Peaxi162Scf00337g00002 Petunia axillaris HOM05D000291 ORTHO05D003931 8.8e-18 94.7 197 33.0
TWI74G0327 Tripterygium wilfordii HOM05D000291 ORTHO05D003931 8.8e-18 94.7 198 31.8
COL.COLO4_27575 Corchorus olitorius HOM05D000291 ORTHO05D003931 1.1e-17 94.4 170 31.2
Sp1g23050 Schrenkiella parvula HOM05D000291 ORTHO05D003931 1.5e-17 94.0 133 39.8
BcaC05g26492 Brassica carinata HOM05D000291 ORTHO05D003931 2.0e-17 93.6 118 41.5
C05p25420 Brassica napus HOM05D000291 ORTHO05D003931 2.0e-17 93.6 118 41.5
BolC5t31274H Brassica oleracea HOM05D000291 ORTHO05D003931 2.0e-17 93.6 118 41.5
CsaV3_5G012940 Cucumis sativus L. HOM05D000291 ORTHO05D003931 2.0e-17 93.6 199 30.7
Nitab4.5_0001935g0010 Nicotiana tabacum HOM05D000291 ORTHO05D003931 2.0e-17 93.6 176 34.1
BraA09t39407Z Brassica rapa HOM05D000291 ORTHO05D003931 2.6e-17 93.2 136 39.0
Duzib248G1511 Durio zibethinus HOM05D000291 ORTHO05D003931 2.6e-17 93.2 176 33.0
Potri.008G140100 Populus trichocarpa HOM05D000291 ORTHO05D003931 2.6e-17 93.2 192 33.3
TWI53G0385 Tripterygium wilfordii HOM05D000291 ORTHO05D003931 2.6e-17 93.2 198 32.8
MELO3C020069.2 Cucumis melo HOM05D000291 ORTHO05D003931 3.3e-17 92.8 175 33.1
Nitab4.5_0000521g0030 Nicotiana tabacum HOM05D000291 ORTHO05D003931 3.3e-17 92.8 171 33.9
PGSC0003DMG400022769 Solanum tuberosum HOM05D000291 ORTHO05D003931 3.3e-17 92.8 123 40.7
Haze_10805 Corylus avellana HOM05D000291 ORTHO05D003931 4.4e-17 92.4 205 31.7
GSVIVG01011590001 Vitis vinifera HOM05D000291 ORTHO05D003931 4.4e-17 92.4 118 42.4
Carub.0001s2533 Capsella rubella HOM05D000291 ORTHO05D003931 5.7e-17 92.0 118 40.7
Sabra08G0106200 Salix brachista HOM05D000291 ORTHO05D003931 5.7e-17 92.0 192 31.8
Sopen01g001030 Solanum pennellii HOM05D000291 ORTHO05D003931 5.7e-17 92.0 123 40.7
AT1G25240 Arabidopsis thaliana HOM05D000291 ORTHO05D003931 7.5e-17 91.7 118 40.7
BcaB03g14022 Brassica carinata HOM05D000291 ORTHO05D003931 9.7e-17 91.3 132 39.4
BcaC05g26693 Brassica carinata HOM05D000291 ORTHO05D003931 1.3e-16 90.9 118 40.7
Thhalv10009826m.g Eutrema salsugineum HOM05D000291 ORTHO05D003931 1.3e-16 90.9 118 41.5
Solyc01g005070.3 Solanum lycopersicum HOM05D000291 ORTHO05D003931 1.3e-16 90.9 123 42.3
Phvul.002G184000 Phaseolus vulgaris HOM05D000291 ORTHO05D003931 1.7e-16 90.5 200 31.5
Actinidia13755 Actinidia chinensis HOM05D000291 ORTHO05D003931 2.2e-16 90.1 171 34.5
A07p12430 Brassica napus HOM05D000291 ORTHO05D003931 2.2e-16 90.1 118 40.7
A09p39070 Brassica napus HOM05D000291 ORTHO05D003931 2.2e-16 90.1 118 39.8
BraA07t29024Z Brassica rapa HOM05D000291 ORTHO05D003931 2.2e-16 90.1 118 40.7
CSS0023729 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D003931 2.2e-16 90.1 172 31.4
BcaC06g35236 Brassica carinata HOM05D000291 ORTHO05D003931 3.7e-16 89.4 133 38.3
C07p18380 Brassica napus HOM05D000291 ORTHO05D003931 3.7e-16 89.4 133 38.3
BolC7t42348H Brassica oleracea HOM05D000291 ORTHO05D003931 3.7e-16 89.4 133 38.3
Aa31LG7G9300 Aethionema arabicum HOM05D000291 ORTHO05D003931 4.8e-16 89.0 118 39.8
VMungo0251G1108 Vigna mungo HOM05D000291 ORTHO05D003931 4.8e-16 89.0 200 30.5
TPR.G11864 Trifolium pratense HOM05D000291 ORTHO05D003931 6.3e-16 88.6 118 39.0
Oeu062659.2 Olea europaea HOM05D000291 ORTHO05D003931 8.2e-16 88.2 171 32.7
Psat7g085440 Pisum sativum HOM05D000291 ORTHO05D003931 8.2e-16 88.2 176 33.0
QL03p039206 Quercus lobata HOM05D000291 ORTHO05D003931 1.1e-15 87.8 118 36.4
CARHR060780 Cardamine hirsuta HOM05D000291 ORTHO05D003931 1.8e-15 87.0 131 34.4
Eucgr.B02650 Eucalyptus grandis HOM05D000291 ORTHO05D003931 2.4e-15 86.7 128 39.8
Manes.17G090000 Manihot esculenta HOM05D000291 ORTHO05D003931 2.4e-15 86.7 207 30.4
Lalb_Chr07g0187951 Lupinus albus HOM05D000291 ORTHO05D003931 3.1e-15 86.3 171 29.8
Cc11_g05670 Coffea canephora HOM05D000291 ORTHO05D003931 4.1e-15 85.9 206 36.4
Manes.15G139100 Manihot esculenta HOM05D000291 ORTHO05D003931 5.3e-15 85.5 171 32.2
Carub.0002s1459 Capsella rubella HOM05D000291 ORTHO05D003931 7.0e-15 85.1 124 37.1
Dinv08897 Davidia involucrata HOM05D000291 ORTHO05D003931 7.0e-15 85.1 171 31.0
A07p34590 Brassica napus HOM05D000291 ORTHO05D003931 1.2e-14 84.3 131 35.9
CARHR015200 Cardamine hirsuta HOM05D000291 ORTHO05D003931 1.2e-14 84.3 127 36.2
Ca_18194_v3 Cicer arietinum L. HOM05D000291 ORTHO05D003931 1.2e-14 84.3 125 38.4
HanXRQChr08g0224291 Helianthus annuus HOM05D000291 ORTHO05D003931 1.2e-14 84.3 125 36.0
arahy.Tifrunner.gnm1.ann1.MBA9QB Arachis hypogaea HOM05D000291 ORTHO05D003931 1.6e-14 84.0 121 39.7
Nitab4.5_0000926g0020 Nicotiana tabacum HOM05D000291 ORTHO05D003931 1.6e-14 84.0 178 33.1
Aa31LG5G20980 Aethionema arabicum HOM05D000291 ORTHO05D003931 2.0e-14 83.6 118 35.6
Oeu006314.1 Olea europaea HOM05D000291 ORTHO05D003931 2.0e-14 83.6 174 28.7
PGR102G0361 Punica granatum HOM05D000291 ORTHO05D003931 2.0e-14 83.6 119 42.0
Sed0014197 Sechium edule HOM05D000291 ORTHO05D003931 2.0e-14 83.6 123 35.8
PGSC0003DMG400029445 Solanum tuberosum HOM05D000291 ORTHO05D003931 2.0e-14 83.6 171 33.9
BraA07t31077Z Brassica rapa HOM05D000291 ORTHO05D003931 2.6e-14 83.2 131 35.1
Migut.E00568 Erythranthe guttata HOM05D000291 ORTHO05D003931 2.6e-14 83.2 123 37.4
AL2G26800 Arabidopsis lyrata HOM05D000291 ORTHO05D003931 4.5e-14 82.4 132 35.6
Lalb_Chr04g0258811 Lupinus albus HOM05D000291 ORTHO05D003931 4.5e-14 82.4 118 34.7
Sp5g23110 Schrenkiella parvula HOM05D000291 ORTHO05D003931 4.5e-14 82.4 121 38.0
HanXRQChr12g0366061 Helianthus annuus HOM05D000291 ORTHO05D003931 5.9e-14 82.0 118 38.1
SHI04214 Sapria himalayana HOM05D000291 ORTHO05D003931 7.7e-14 81.6 180 32.8
MSTRG.2103 Avicennia marina HOM05D000291 ORTHO05D003931 1.3e-13 80.9 127 36.2
FAN07G2183 Fragaria x ananassa HOM05D000291 ORTHO05D003931 1.3e-13 80.9 123 37.4
BcaB03g15131 Brassica carinata HOM05D000291 ORTHO05D003931 1.7e-13 80.5 118 36.4
BolC2t08521H Brassica oleracea HOM05D000291 ORTHO05D003931 1.7e-13 80.5 131 37.4
Sopen04g003500 Solanum pennellii HOM05D000291 ORTHO05D003931 2.2e-13 80.1 171 32.2
BcaC03g14907 Brassica carinata HOM05D000291 ORTHO05D003931 2.9e-13 79.7 126 38.1
C02p23860 Brassica napus HOM05D000291 ORTHO05D003931 2.9e-13 79.7 126 38.1
RcHm_v2.0_Chr4g0433721 Rosa chinensis HOM05D000291 ORTHO05D003931 2.9e-13 79.7 131 38.2
BolC6t39239H Brassica oleracea HOM05D000291 ORTHO05D003931 3.8e-13 79.3 124 34.7
Sp1g13080 Schrenkiella parvula HOM05D000291 ORTHO05D003931 3.8e-13 79.3 132 34.1
FAN12G1393 Fragaria x ananassa HOM05D000291 ORTHO05D003931 5.0e-13 79.0 123 37.4
FAN12G3568 Fragaria x ananassa HOM05D000291 ORTHO05D003931 5.0e-13 79.0 123 37.4
BcaC08g46238 Brassica carinata HOM05D000291 ORTHO05D003931 6.5e-13 78.6 131 35.1
A02p14740 Brassica napus HOM05D000291 ORTHO05D003931 6.5e-13 78.6 118 37.3
C06p41920 Brassica napus HOM05D000291 ORTHO05D003931 6.5e-13 78.6 131 35.1
BraA02t06542Z Brassica rapa HOM05D000291 ORTHO05D003931 6.5e-13 78.6 118 37.3
ECA233G1776 Erigeron canadensis HOM05D000291 ORTHO05D003931 6.5e-13 78.6 125 36.0
FvH4_4g26150 Fragaria vesca HOM05D000291 ORTHO05D003931 6.5e-13 78.6 123 36.6
FAN17G2828 Fragaria x ananassa HOM05D000291 ORTHO05D003931 6.5e-13 78.6 122 37.7
Thhalv10018742m.g Eutrema salsugineum HOM05D000291 ORTHO05D003931 8.5e-13 78.2 127 33.1
FAN22G0262 Fragaria x ananassa HOM05D000291 ORTHO05D003931 8.5e-13 78.2 123 36.6
Medtr1g033880 Medicago truncatula HOM05D000291 ORTHO05D003931 8.5e-13 78.2 118 37.3
AT1G68110 Arabidopsis thaliana HOM05D000291 ORTHO05D003931 1.1e-12 77.8 119 34.5
Sc13g0003680 Simmondsia chinensis HOM05D000291 ORTHO05D003931 1.1e-12 77.8 119 38.7
Lalb_Chr12g0209311 Lupinus albus HOM05D000291 ORTHO05D003931 1.5e-12 77.4 179 30.7
Rhsim09G0085200 Rhododendron simsii HOM05D000291 ORTHO05D003931 1.5e-12 77.4 172 30.2
BcaB05g24340 Brassica carinata HOM05D000291 ORTHO05D003931 2.5e-12 76.6 120 36.7
Solyc04g008350.1 Solanum lycopersicum HOM05D000291 ORTHO05D003931 2.5e-12 76.6 171 31.6
Oeu043967.1 Olea europaea HOM05D000291 ORTHO05D003931 3.2e-12 76.3 176 30.1
Thhalv10008121m.g Eutrema salsugineum HOM05D000291 ORTHO05D003931 4.2e-12 75.9 121 33.1
Glyma.20G010400 Glycine max HOM05D000291 ORTHO05D003931 4.2e-12 75.9 118 35.6
Lsat_1_v5_gn_3_105601 Lactuca sativa HOM05D000291 ORTHO05D003931 4.2e-12 75.9 172 29.1
TPR.G11152 Trifolium pratense HOM05D000291 ORTHO05D003931 5.5e-12 75.5 119 36.1
BcaC05g25389 Brassica carinata HOM05D000291 ORTHO05D003931 7.2e-12 75.1 131 33.6
A06p10750 Brassica napus HOM05D000291 ORTHO05D003931 1.2e-11 74.3 133 33.1
BraA06t24254Z Brassica rapa HOM05D000291 ORTHO05D003931 1.2e-11 74.3 133 33.1
THA.LOC104824093 Tarenaya hassleriana HOM05D000291 ORTHO05D003931 1.2e-11 74.3 118 33.1
C05p12650 Brassica napus HOM05D000291 ORTHO05D003931 1.6e-11 73.9 133 33.1
Lsat_1_v5_gn_8_34501 Lactuca sativa HOM05D000291 ORTHO05D003931 1.6e-11 73.9 122 33.6
Phvul.003G012900 Phaseolus vulgaris HOM05D000291 ORTHO05D003931 1.6e-11 73.9 117 35.0
Sp2g13360 Schrenkiella parvula HOM05D000291 ORTHO05D003931 1.6e-11 73.9 117 35.0
BcaB02g06542 Brassica carinata HOM05D000291 ORTHO05D003931 2.7e-11 73.2 134 34.3
Glyma.07G178000 Glycine max HOM05D000291 ORTHO05D003931 2.7e-11 73.2 199 26.6
ECA246G4910 Erigeron canadensis HOM05D000291 ORTHO05D003931 3.6e-11 72.8 175 27.4
HanXRQChr17g0566291 Helianthus annuus HOM05D000291 ORTHO05D003931 3.6e-11 72.8 171 31.0
SGA_v2.0_scaffold5G03053 Striga asiatica HOM05D000291 ORTHO05D003931 3.6e-11 72.8 176 28.4
Carub.0001s1446 Capsella rubella HOM05D000291 ORTHO05D003931 4.7e-11 72.4 131 32.1
Lj2g0015127 Lotus japonicus HOM05D000291 ORTHO05D003931 6.1e-11 72.0 176 30.1
BolC5t30009H Brassica oleracea HOM05D000291 ORTHO05D003931 8.0e-11 71.6 125 32.8
Prupe.1G338400 Prunus persica HOM05D000291 ORTHO05D003931 8.0e-11 71.6 143 33.6
AT1G14686 Arabidopsis thaliana HOM05D000291 ORTHO05D003931 1.0e-10 71.2 128 30.5
FAN17G1020 Fragaria x ananassa HOM05D000291 ORTHO05D003931 1.0e-10 71.2 122 36.9
DCAR_026893 Daucus carota HOM05D000291 ORTHO05D003931 2.3e-10 70.1 123 36.6
VMungo1215G0571 Vigna mungo HOM05D000291 ORTHO05D003931 2.3e-10 70.1 194 26.8
AL1G26670 Arabidopsis lyrata HOM05D000291 ORTHO05D003931 3.0e-10 69.7 131 30.5
AL5G11060 Arabidopsis lyrata HOM05D000291 ORTHO05D003931 6.8e-10 68.6 130 31.5
Psat6g095720 Pisum sativum HOM05D000291 ORTHO05D003931 6.8e-10 68.6 119 32.8
Carub.0005s0094 Capsella rubella HOM05D000291 ORTHO05D003931 3.4e-09 66.2 130 30.8
THA.LOC104805102 Tarenaya hassleriana HOM05D000291 ORTHO05D003931 3.4e-09 66.2 127 28.3
DCAR_023539 Daucus carota HOM05D000291 ORTHO05D003931 4.4e-09 65.9 124 35.5
CDE06G2421 Ceratophyllum demersum HOM05D000291 ORTHO05D003931 9.8e-09 64.7 127 35.4
Aa31LG1G410 Aethionema arabicum HOM05D000291 ORTHO05D003931 1.3e-08 64.3 129 31.8
Dinv20502 Davidia involucrata HOM05D000291 ORTHO05D003931 1.3e-08 64.3 182 29.1
Dinv20539 Davidia involucrata HOM05D000291 ORTHO05D003931 1.3e-08 64.3 182 29.1
CARHR144530 Cardamine hirsuta HOM05D000291 ORTHO05D003931 1.7e-08 63.9 125 28.8
MD16G1012900 Malus domestica HOM05D000291 ORTHO05D003931 2.8e-08 63.2 181 25.4
MD13G1015400 Malus domestica HOM05D000291 ORTHO05D003931 4.8e-08 62.4 182 25.8
CANSAT78G1280 Cannabis sativa HOM05D000291 ORTHO05D003931 1.1e-07 61.2 180 28.9
AT2G01920 Arabidopsis thaliana HOM05D000291 ORTHO05D003931 1.4e-07 60.8 118 31.4
ClCG11G000970 Citrullus lanatus HOM05D000291 ORTHO05D003931 1.8e-07 60.5 118 32.2
ECA234G0782 Erigeron canadensis HOM05D000291 ORTHO05D003931 3.1e-07 59.7 171 26.9


User provided reference genes

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