Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 1.2e-79 299.7 142 100.0
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 7.4e-77 290.4 142 95.1
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 8.7e-62 240.4 137 78.1
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 2.5e-61 238.8 140 77.1
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 3.3e-61 238.4 140 77.9
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.4e-59 232.3 136 77.2
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 2.9e-57 225.3 136 79.4
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 2.9e-57 225.3 136 78.7
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 5.0e-57 224.6 138 75.4
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 5.0e-57 224.6 136 77.9
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.5e-57 224.2 138 76.8
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.5e-57 224.2 138 76.8
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 6.5e-57 224.2 138 76.8
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 6.5e-57 224.2 136 77.9
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.5e-57 223.8 137 75.2
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 8.5e-57 223.8 134 76.9
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.1e-56 223.4 136 77.9
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.4e-56 223.0 138 75.4
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.9e-56 222.6 138 76.8
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.5e-56 222.2 137 74.5
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 2.5e-56 222.2 134 79.1
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 3.2e-56 221.9 138 75.4
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.2e-56 221.9 138 74.6
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 4.2e-56 221.5 138 73.9
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 4.2e-56 221.5 138 73.9
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 4.2e-56 221.5 134 79.1
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 4.2e-56 221.5 138 76.1
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 7.2e-56 220.7 136 78.7
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 9.3e-56 220.3 138 76.1
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.2e-55 219.9 138 76.1
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.6e-55 219.5 138 74.6
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 1.6e-55 219.5 138 74.6
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 1.6e-55 219.5 134 76.9
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.6e-55 219.5 138 74.6
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 2.1e-55 219.2 138 73.9
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 2.7e-55 218.8 138 73.9
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 2.7e-55 218.8 138 73.9
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.7e-55 218.8 138 73.2
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 3.6e-55 218.4 138 74.6
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 6.1e-55 217.6 138 74.6
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 6.1e-55 217.6 138 73.9
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 6.1e-55 217.6 134 76.1
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 7.9e-55 217.2 138 73.2
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 7.9e-55 217.2 138 73.2
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.0e-54 216.9 138 73.2
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 1.0e-54 216.9 138 73.2
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.0e-54 216.9 138 73.2
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 1.0e-54 216.9 138 73.2
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 1.0e-54 216.9 134 77.6
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 1.0e-54 216.9 134 76.1
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.0e-54 216.9 134 76.1
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.0e-54 216.9 134 76.1
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.0e-54 216.9 134 76.1
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 1.0e-54 216.9 138 74.6
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.3e-54 216.5 140 73.6
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 2.3e-54 215.7 138 72.5
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 2.3e-54 215.7 138 72.5
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 2.3e-54 215.7 138 73.2
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 2.3e-54 215.7 138 73.2
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.3e-54 215.7 138 72.5
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 3.0e-54 215.3 134 75.4
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 3.0e-54 215.3 138 73.2
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 3.0e-54 215.3 138 73.2
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 3.9e-54 214.9 134 75.4
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 3.9e-54 214.9 134 76.1
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 3.9e-54 214.9 134 76.1
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 5.1e-54 214.5 134 74.6
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 6.7e-54 214.2 134 73.9
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 6.7e-54 214.2 138 73.9
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 6.7e-54 214.2 138 73.9
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 6.7e-54 214.2 138 71.7
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.1e-53 213.4 138 73.2
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.1e-53 213.4 138 73.2
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 1.1e-53 213.4 138 72.5
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.1e-53 213.4 136 75.0
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.1e-53 213.4 138 72.5
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.1e-53 213.4 138 71.7
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 1.5e-53 213.0 138 72.5
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.5e-53 213.0 138 71.7
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 1.5e-53 213.0 138 72.5
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.9e-53 212.6 134 73.9
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.9e-53 212.6 134 74.6
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 1.9e-53 212.6 138 71.7
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.9e-53 212.6 138 71.7
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 2.5e-53 212.2 134 75.4
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 4.3e-53 211.5 138 73.2
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 4.3e-53 211.5 138 71.7
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 7.4e-53 210.7 134 73.1
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 9.7e-53 210.3 138 71.0
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 4.8e-52 208.0 138 71.0
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.1e-51 206.8 138 72.5
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.4e-51 206.5 138 71.7
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.8e-51 206.1 138 69.6
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.0e-50 202.6 123 79.7
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 2.6e-50 202.2 127 74.8
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 1.7e-49 199.5 127 75.6
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.0e-49 198.0 129 74.4
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 6.5e-49 197.6 133 71.4
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.1e-48 196.8 118 79.7
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.4e-48 196.4 130 71.5
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.9e-48 196.1 127 73.2
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 4.2e-48 194.9 139 70.5
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 5.5e-48 194.5 133 66.9
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 9.4e-48 193.7 123 75.6
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.1e-46 188.0 127 71.7
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 6.7e-46 187.6 133 66.2
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 2.0e-45 186.0 140 62.1
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 2.0e-45 186.0 127 73.2
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.4e-43 179.9 130 63.8
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.8e-43 179.5 130 63.8
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 6.9e-43 177.6 204 49.0
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 1.3e-41 173.3 123 68.3
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.3e-41 173.3 149 57.7
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 9.4e-40 167.2 124 67.7
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 3.9e-38 161.8 131 58.0
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.5e-34 148.7 95 73.7
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 4.8e-28 128.3 135 52.6
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.4e-27 126.7 88 67.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 2.7e-26 122.5 79 70.9
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 4.5e-26 121.7 135 50.4
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 4.5e-26 121.7 74 75.7
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 5.9e-26 121.3 77 72.7
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 5.9e-26 121.3 77 72.7
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 7.7e-26 120.9 77 72.7
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 7.7e-26 120.9 77 72.7
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.2e-25 119.4 74 71.6
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 1.9e-24 116.3 73 74.0
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 6.1e-23 111.3 78 67.9
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 3.0e-22 109.0 127 42.5
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 1.5e-21 106.7 63 81.0
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 5.7e-21 104.8 76 63.2
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 3.1e-19 99.0 144 44.4
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 4.5e-18 95.1 68 70.6
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 1.3e-17 93.6 117 45.3
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 7.2e-16 87.8 128 38.3
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.8e-14 83.2 71 59.2
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 7.5e-13 77.8 46 69.6
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 6.3e-12 74.7 162 36.4
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.6e-10 70.1 52 67.3
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 1.8e-06 56.6 33 69.7
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 5.2e-06 55.1 131 29.8


User provided reference genes

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