Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb099990 Zea mays HOM05D003357 ORTHO05D003779 1.9e-134 482.6 274 100.0
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 3.3e-17 93.2 197 33.0
Potri.001G163800 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.8e-15 87.4 199 31.2
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 4.1e-15 86.3 190 31.6
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 6.9e-15 85.5 161 31.7
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 2.5e-12 77.0 169 29.0
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 4.2e-12 76.3 164 29.9
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 4.2e-12 76.3 164 29.9
Gorai.009G147200 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.2e-11 74.7 164 29.9
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 2.1e-11 73.9 155 33.5
Sc15g0000760 Simmondsia chinensis HOM05D003357 ORTHO05D003779 2.1e-11 73.9 167 31.1
PSO421G0588 Papaver somniferum HOM05D003357 ORTHO05D003779 2.7e-11 73.6 156 26.9
Sabra01G0129000 Salix brachista HOM05D003357 ORTHO05D003779 3.6e-11 73.2 217 26.3
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 6.1e-11 72.4 173 27.2
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 1.0e-10 71.6 199 28.1
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 1.0e-10 71.6 155 32.3
Duzib235G0273 Durio zibethinus HOM05D003357 ORTHO05D003779 3.9e-10 69.7 198 25.3
Solyc03g123510.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 3.9e-10 69.7 175 29.1
Nitab4.5_0003987g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 5.1e-10 69.3 158 29.1
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 1.5e-09 67.8 150 36.0
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 1.5e-09 67.8 150 36.0
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 1.5e-09 67.8 151 36.4
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 1.5e-09 67.8 150 36.0
Peaxi162Scf00038g02213 Petunia axillaris HOM05D003357 ORTHO05D003779 1.5e-09 67.8 141 34.8
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 2.0e-09 67.4 150 34.0
MELO3C024316.2 Cucumis melo HOM05D003357 ORTHO05D003779 2.6e-09 67.0 199 27.1
QL05p001541 Quercus lobata HOM05D003357 ORTHO05D003779 2.6e-09 67.0 197 25.9
QL05p001815 Quercus lobata HOM05D003357 ORTHO05D003779 2.6e-09 67.0 197 25.9
COL.COLO4_30848 Corchorus olitorius HOM05D003357 ORTHO05D003779 4.4e-09 66.2 154 27.9
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 4.4e-09 66.2 156 27.6
Lsat_1_v5_gn_0_41661 Lactuca sativa HOM05D003357 ORTHO05D003779 9.7e-09 65.1 178 24.7
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 1.3e-08 64.7 149 33.6
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.7e-08 64.3 166 30.7
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 2.2e-08 63.9 149 33.6
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 2.8e-08 63.5 149 32.9
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 2.8e-08 63.5 150 33.3
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 3.7e-08 63.2 152 32.9
CsaV3_7G034060 Cucumis sativus L. HOM05D003357 ORTHO05D003779 4.8e-08 62.8 199 27.1
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 4.8e-08 62.8 146 32.2
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 6.3e-08 62.4 146 32.9
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 8.2e-08 62.0 150 34.0
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 8.2e-08 62.0 150 34.0
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 8.2e-08 62.0 150 34.0
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 8.2e-08 62.0 150 34.0
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 8.2e-08 62.0 153 32.7
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 8.2e-08 62.0 158 31.6
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 1.1e-07 61.6 159 31.4
SalBow2G0668 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.1e-07 61.6 205 29.8
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 1.1e-07 61.6 150 33.3
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 1.4e-07 61.2 152 32.9
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 1.4e-07 61.2 146 32.9
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 1.4e-07 61.2 146 32.2
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 1.8e-07 60.8 146 32.2
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 2.4e-07 60.5 149 32.9
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 2.4e-07 60.5 155 34.8
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 3.1e-07 60.1 146 30.8
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 3.1e-07 60.1 153 30.7
FAN05G0423 Fragaria x ananassa HOM05D003357 ORTHO05D003779 4.1e-07 59.7 175 28.0
HanXRQChr15g0497241 Helianthus annuus HOM05D003357 ORTHO05D003779 4.1e-07 59.7 147 26.5
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 4.1e-07 59.7 157 33.1
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 4.1e-07 59.7 163 31.3
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 5.3e-07 59.3 163 29.4
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 6.9e-07 58.9 147 34.0
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 6.9e-07 58.9 146 32.2
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 9.1e-07 58.5 147 32.0
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 9.1e-07 58.5 150 33.3
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 9.1e-07 58.5 157 31.2
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 9.1e-07 58.5 146 33.6
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 1.2e-06 58.2 149 33.6
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 1.2e-06 58.2 149 33.6
CAN.G790.70 Capsicum annuum HOM05D003357 ORTHO05D003779 1.2e-06 58.2 151 30.5
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 1.2e-06 58.2 128 32.8
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.5e-06 57.8 147 33.3
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 1.5e-06 57.8 146 31.5
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 1.5e-06 57.8 146 32.2
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 1.5e-06 57.8 146 34.2
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 2.0e-06 57.4 147 34.0
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.6e-06 57.0 147 30.6
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 3.4e-06 56.6 157 31.8
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 3.4e-06 56.6 150 31.3
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 3.4e-06 56.6 149 30.9
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.5e-06 56.2 156 30.8
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 4.5e-06 56.2 158 32.3
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 5.9e-06 55.8 146 30.8
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 5.9e-06 55.8 146 30.8
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 7.7e-06 55.5 146 31.5
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 7.7e-06 55.5 149 32.9
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 7.7e-06 55.5 149 32.9
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 7.7e-06 55.5 156 32.1
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 7.7e-06 55.5 154 31.8
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 7.7e-06 55.5 154 31.8
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 7.7e-06 55.5 153 31.4


User provided reference genes

Program Settings