Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 1.9e-40 168.7 83 100.0
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 3.4e-13 78.2 47 89.4
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 5.9e-10 67.4 47 72.3
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 7.7e-10 67.0 46 71.7
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 7.7e-10 67.0 47 70.2
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 7.7e-10 67.0 47 70.2
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 7.7e-10 67.0 47 70.2
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 7.7e-10 67.0 47 70.2
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 7.7e-10 67.0 47 70.2
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 1.0e-09 66.6 47 68.1
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.0e-09 66.6 61 50.8
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 2.9e-09 65.1 47 66.0
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 3.8e-09 64.7 47 66.0
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 3.8e-09 64.7 47 66.0
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 3.8e-09 64.7 47 66.0
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 5.0e-09 64.3 58 53.4
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 6.5e-09 63.9 60 55.0
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 8.5e-09 63.5 47 63.8
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.5e-08 62.8 47 66.0
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 1.5e-08 62.8 47 66.0
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 1.5e-08 62.8 60 53.3
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 1.5e-08 62.8 47 68.1
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.5e-08 62.8 47 66.0
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 1.9e-08 62.4 47 63.8
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 1.9e-08 62.4 47 66.0
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 1.9e-08 62.4 47 63.8
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 2.5e-08 62.0 47 63.8
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 2.5e-08 62.0 60 53.3
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.2e-08 61.6 60 51.7
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 3.2e-08 61.6 60 51.7
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 3.2e-08 61.6 47 61.7
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 3.2e-08 61.6 60 53.3
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 3.2e-08 61.6 47 61.7
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 3.2e-08 61.6 45 68.9
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 4.2e-08 61.2 47 63.8
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 4.2e-08 61.2 47 66.0
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 4.2e-08 61.2 60 53.3
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 4.2e-08 61.2 47 63.8
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 4.2e-08 61.2 47 63.8
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 4.2e-08 61.2 47 63.8
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 5.5e-08 60.8 61 49.2
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 7.2e-08 60.5 59 52.5
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 7.2e-08 60.5 60 51.7
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 7.2e-08 60.5 47 66.0
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 9.4e-08 60.1 58 51.7
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 9.4e-08 60.1 47 61.7
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 1.2e-07 59.7 47 57.4
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 1.6e-07 59.3 47 57.4
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.6e-07 59.3 47 61.7
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 1.6e-07 59.3 47 63.8
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.6e-07 59.3 60 50.0
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 2.1e-07 58.9 47 55.3
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 2.1e-07 58.9 47 55.3
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.1e-07 58.9 47 61.7
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.1e-07 58.9 47 61.7
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 2.1e-07 58.9 47 61.7
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 2.1e-07 58.9 58 53.4
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 2.1e-07 58.9 58 53.4
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 2.1e-07 58.9 60 50.0
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 2.7e-07 58.5 47 55.3
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.7e-07 58.5 47 59.6
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.7e-07 58.5 47 59.6
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 2.7e-07 58.5 60 50.0
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 2.7e-07 58.5 47 61.7
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 2.7e-07 58.5 47 61.7
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 2.7e-07 58.5 47 61.7
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 3.6e-07 58.2 47 59.6
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 3.6e-07 58.2 47 59.6
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 4.7e-07 57.8 71 45.1
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 4.7e-07 57.8 47 57.4
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 6.1e-07 57.4 47 59.6
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 8.0e-07 57.0 47 59.6
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 2.3e-06 55.5 47 57.4
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 2.3e-06 55.5 47 57.4
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 2.3e-06 55.5 47 57.4
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 2.3e-06 55.5 47 57.4
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.3e-06 55.5 47 59.6
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.3e-06 55.5 47 59.6
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 3.0e-06 55.1 47 55.3
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 5.2e-06 54.3 47 63.8


User provided reference genes

Program Settings