Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 2.9e-225 785.0 436 100.0
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.9e-176 622.9 441 79.6
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 7.0e-94 348.6 467 46.9
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.6e-93 347.4 474 47.9
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.7e-92 344.0 454 47.4
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 3.8e-92 342.8 474 46.6
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 6.5e-92 342.0 481 43.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 1.1e-91 341.3 467 46.5
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.5e-91 340.9 467 46.5
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.9e-91 340.5 465 46.0
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 7.2e-91 338.6 480 47.7
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.6e-90 337.4 484 42.1
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.4e-89 334.3 370 51.1
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 4.0e-89 332.8 471 48.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 8.8e-89 331.6 467 45.4
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 2.6e-88 330.1 478 43.5
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 3.4e-88 329.7 487 44.6
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 7.5e-88 328.6 481 43.7
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 7.5e-88 328.6 488 44.3
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 9.8e-88 328.2 472 43.4
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 9.8e-88 328.2 476 47.1
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 9.8e-88 328.2 479 44.5
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 1.7e-87 327.4 474 44.7
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 2.2e-87 327.0 483 42.4
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 4.9e-87 325.9 470 43.4
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 6.3e-87 325.5 483 44.1
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 1.4e-86 324.3 457 47.9
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.4e-86 324.3 469 42.9
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 1.4e-86 324.3 463 44.7
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.8e-86 323.9 487 41.7
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 2.4e-86 323.6 473 43.3
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 2.4e-86 323.6 500 42.4
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 5.4e-86 322.4 478 46.9
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 5.4e-86 322.4 476 42.2
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 7.0e-86 322.0 465 46.7
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.6e-85 320.9 490 42.4
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 5.9e-85 318.9 386 46.6
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 7.7e-85 318.5 474 45.4
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 7.7e-85 318.5 380 46.1
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 7.7e-85 318.5 477 42.6
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.3e-84 317.8 481 44.5
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 2.3e-84 317.0 470 44.3
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 6.6e-84 315.5 483 42.4
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 6.6e-84 315.5 483 42.4
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 1.1e-83 314.7 457 45.7
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 1.1e-83 314.7 481 41.6
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.5e-83 314.3 232 71.1
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 1.5e-83 314.3 483 42.7
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.5e-83 314.3 382 46.3
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 1.9e-83 313.9 498 41.2
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.9e-83 313.9 469 44.6
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 2.5e-83 313.5 475 41.5
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 3.3e-83 313.2 495 41.8
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 4.2e-83 312.8 476 41.4
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 4.2e-83 312.8 473 45.5
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.2e-82 311.2 379 46.7
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.2e-82 311.2 482 41.3
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.6e-82 310.8 503 41.4
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 2.1e-82 310.5 501 44.9
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 2.1e-82 310.5 475 42.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 3.6e-82 309.7 485 42.9
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.7e-82 309.3 478 45.4
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 6.1e-82 308.9 465 46.5
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 6.1e-82 308.9 490 44.9
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.0e-81 308.1 475 41.7
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.0e-81 308.1 468 44.2
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.3e-81 307.0 475 44.6
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 4.0e-81 306.2 520 40.0
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 4.0e-81 306.2 480 41.2
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 6.8e-81 305.4 476 44.1
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 6.8e-81 305.4 467 44.5
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 2.0e-80 303.9 478 42.3
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 3.4e-80 303.1 474 44.9
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 3.4e-80 303.1 470 46.0
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 4.4e-80 302.8 479 44.3
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 4.4e-80 302.8 474 44.9
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 9.8e-80 301.6 470 43.6
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 9.8e-80 301.6 478 40.4
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 9.8e-80 301.6 476 40.3
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.7e-79 300.8 473 43.1
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 2.9e-79 300.1 475 43.2
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 4.9e-79 299.3 381 44.6
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.1e-78 298.1 475 45.9
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.4e-78 297.0 475 42.9
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.2e-78 296.6 474 42.0
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 4.1e-78 296.2 321 50.2
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 4.1e-78 296.2 465 44.9
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 7.0e-78 295.4 473 44.0
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 9.2e-78 295.0 481 39.5
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.6e-77 294.3 476 44.1
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 2.7e-77 293.5 467 43.3
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 4.6e-77 292.7 377 45.6
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 1.0e-76 291.6 480 40.8
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 6.6e-76 288.9 480 40.6
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 8.6e-76 288.5 384 43.8
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 1.1e-75 288.1 472 39.8
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 5.6e-75 285.8 466 40.6
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.2e-74 284.6 475 39.8
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 2.0e-72 277.3 462 42.4
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.0e-64 250.8 404 40.8
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.7e-60 237.7 405 37.8
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 6.8e-57 225.7 194 59.3
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 9.9e-56 221.9 303 44.9
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 2.9e-55 220.3 427 38.2
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 3.7e-55 219.9 400 41.5
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 9.2e-54 215.3 314 42.4
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.7e-53 213.8 413 36.1
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 7.8e-53 212.2 402 36.1
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 7.8e-53 212.2 374 37.7
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 2.3e-52 210.7 205 52.2
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 5.1e-52 209.5 293 41.3
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 4.2e-46 189.9 457 32.8
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.9e-43 181.0 229 45.4
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.1e-41 175.3 384 35.4
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.5e-40 171.4 217 47.9
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 3.2e-30 137.1 321 32.7
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.6e-24 117.5 158 46.8
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.7e-23 114.8 319 32.3
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 6.5e-23 112.8 151 41.7
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 7.1e-22 109.4 311 32.5
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 6.0e-21 106.3 274 32.8
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.9e-20 103.6 284 33.8
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 9.6e-19 99.0 94 50.0
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 7.2e-14 82.8 293 30.7
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 7.9e-13 79.3 195 32.8
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 1.0e-12 79.0 221 31.7
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.3e-11 73.9 72 52.8
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 6.9e-09 66.2 134 33.6
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 6.9e-09 66.2 210 25.7
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.5e-08 65.1 186 25.8
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.0e-08 64.7 138 31.2
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.4e-08 63.9 145 29.7
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 3.4e-08 63.9 165 27.3
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 7.7e-08 62.8 152 28.9
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 2.2e-07 61.2 110 38.2
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 3.8e-07 60.5 125 35.2
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.4e-06 58.5 223 25.1
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.5e-06 57.8 209 25.8
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 2.5e-06 57.8 157 29.3
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 2.5e-06 57.8 166 28.3
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.5e-06 57.8 211 24.6
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.2e-06 57.4 145 29.7
Zm00001eb175040 Zea mays HOM05D002747 ORTHO05D003069 4.2e-06 57.0 58 44.8
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.5e-06 56.6 167 26.3
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 7.2e-06 56.2 65 43.1
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 9.4e-06 55.8 135 28.1
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 9.4e-06 55.8 151 29.8


User provided reference genes

Program Settings