Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb099230 Zea mays HOM05D007724 ORTHO05D009363 3.2e-21 105.1 103 100.0
Zm00001eb050360 Zea mays HOM05D007724 ORTHO05D009363 9.9e-15 83.6 50 90.0
Zm00001eb214140 Zea mays HOM05D000263 ORTHO05D009363 3.2e-13 78.6 50 88.0
Zm00001eb163490 Zea mays HOM05D007724 ORTHO05D009363 5.4e-13 77.8 48 85.4
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 3.5e-12 75.1 50 82.0
Zm00001eb378290 Zea mays HOM05D007724 ORTHO05D009363 3.5e-12 75.1 48 83.3
Zm00001eb198090 Zea mays HOM05D007724 ORTHO05D009363 7.8e-12 73.9 48 79.2
Zm00001eb077660 Zea mays HOM05D007724 ORTHO05D009363 1.0e-11 73.6 48 83.3
Zm00001eb170780 Zea mays HOM05D007724 ORTHO05D009363 1.0e-11 73.6 50 80.0
Zm00001eb028320 Zea mays HOM05D007724 ORTHO05D009363 1.3e-11 73.2 48 83.3
Zm00001eb416350 Zea mays HOM05D007724 ORTHO05D009363 1.3e-11 73.2 48 81.2
Zm00001eb012370 Zea mays HOM05D007724 ORTHO05D009363 2.3e-11 72.4 48 83.3
Zm00001eb023750 Zea mays HOM05D007724 ORTHO05D009363 3.0e-11 72.0 48 83.3
Zm00001eb230450 Zea mays HOM05D007724 ORTHO05D009363 3.0e-11 72.0 43 88.4
Zm00001eb361060 Zea mays HOM05D007724 ORTHO05D009363 3.0e-11 72.0 43 93.0
Zm00001eb016360 Zea mays HOM05D007724 ORTHO05D009363 3.9e-11 71.6 48 79.2
Zm00001eb130010 Zea mays HOM05D007724 ORTHO05D009363 3.9e-11 71.6 48 79.2
Zm00001eb275840 Zea mays HOM05D007724 ORTHO05D009363 3.9e-11 71.6 48 83.3
Zm00001eb282370 Zea mays HOM05D007724 ORTHO05D009363 5.1e-11 71.2 48 81.2
Zm00001eb024410 Zea mays HOM05D007724 ORTHO05D009363 6.6e-11 70.9 48 79.2
Zm00001eb060180 Zea mays HOM05D007724 ORTHO05D009363 6.6e-11 70.9 48 79.2
Zm00001eb409810 Zea mays HOM05D007724 ORTHO05D009363 6.6e-11 70.9 48 79.2
Zm00001eb142470 Zea mays HOM05D007724 ORTHO05D009363 8.7e-11 70.5 48 79.2
Zm00001eb272910 Zea mays HOM05D007724 ORTHO05D009363 8.7e-11 70.5 48 81.2
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 1.1e-10 70.1 48 77.1
Zm00001eb008960 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 46 80.4
Zm00001eb079160 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 48 81.2
Zm00001eb088550 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 48 81.2
Zm00001eb130100 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 48 81.2
Zm00001eb154770 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 43 88.4
Zm00001eb197540 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 48 81.2
Zm00001eb235670 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 48 81.2
Zm00001eb264560 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 48 81.2
Zm00001eb334580 Zea mays HOM05D007724 ORTHO05D009363 1.9e-10 69.3 48 81.2
Zm00001eb170010 Zea mays HOM05D007724 ORTHO05D009363 2.5e-10 68.9 46 82.6
Zm00001eb082520 Zea mays HOM05D007724 ORTHO05D009363 3.3e-10 68.6 48 75.0
Zm00001eb091310 Zea mays HOM05D007724 ORTHO05D009363 3.3e-10 68.6 48 77.1
Zm00001eb090270 Zea mays HOM05D007724 ORTHO05D009363 4.3e-10 68.2 45 82.2
Zm00001eb275800 Zea mays HOM05D007724 ORTHO05D009363 4.3e-10 68.2 48 79.2
Zm00001eb285830 Zea mays HOM05D000389 ORTHO05D000287 4.3e-10 68.2 41 82.9
Zm00001eb143040 Zea mays HOM05D007724 ORTHO05D000361 5.6e-10 67.8 48 79.2
Zm00001eb196660 Zea mays HOM05D007724 ORTHO05D009363 5.6e-10 67.8 48 77.1
Zm00001eb005470 Zea mays HOM05D007724 ORTHO05D009363 7.3e-10 67.4 48 79.2
Zm00001eb153690 Zea mays HOM05D007724 ORTHO05D009363 7.3e-10 67.4 47 80.9
Zm00001eb259640 Zea mays HOM05D000034 ORTHO05D000277 7.3e-10 67.4 48 77.1
Zm00001eb316680 Zea mays HOM05D007724 ORTHO05D009363 7.3e-10 67.4 48 75.0
Zm00001eb415200 Zea mays HOM05D007724 ORTHO05D009363 7.3e-10 67.4 48 75.0
Zm00001eb048430 Zea mays HOM05D007724 ORTHO05D009363 9.6e-10 67.0 48 77.1
Zm00001eb118310 Zea mays HOM05D007724 ORTHO05D009363 9.6e-10 67.0 47 74.5
Zm00001eb157750 Zea mays HOM05D007724 ORTHO05D009363 9.6e-10 67.0 48 75.0
Zm00001eb175480 Zea mays HOM05D007724 ORTHO05D009363 9.6e-10 67.0 48 79.2
Zm00001eb336230 Zea mays HOM05D007724 ORTHO05D009363 9.6e-10 67.0 48 75.0
Zm00001eb410610 Zea mays HOM05D007724 ORTHO05D009363 9.6e-10 67.0 40 85.0
Zm00001eb187790 Zea mays HOM05D007724 ORTHO05D009363 1.3e-09 66.6 48 77.1
Zm00001eb297850 Zea mays HOM05D007724 ORTHO05D009363 1.3e-09 66.6 48 77.1
Zm00001eb140710 Zea mays HOM05D007724 ORTHO05D009363 1.6e-09 66.2 48 79.2
Zm00001eb223110 Zea mays HOM05D007724 ORTHO05D009363 1.6e-09 66.2 48 75.0
Zm00001eb351160 Zea mays HOM05D027772 ORTHO05D009363 1.6e-09 66.2 43 83.7
Zm00001eb288460 Zea mays HOM05D007724 ORTHO05D009363 2.1e-09 65.9 48 79.2
Zm00001eb387000 Zea mays HOM05D007724 ORTHO05D009363 2.1e-09 65.9 43 83.7
Zm00001eb400140 Zea mays HOM05D007724 ORTHO05D009363 2.1e-09 65.9 48 77.1
Zm00001eb400150 Zea mays HOM05D007724 ORTHO05D009363 2.1e-09 65.9 48 77.1
Zm00001eb015300 Zea mays HOM05D007724 ORTHO05D009363 2.8e-09 65.5 43 81.4
Zm00001eb225800 Zea mays HOM05D007724 ORTHO05D009363 2.8e-09 65.5 48 75.0
Zm00001eb220350 Zea mays HOM05D007724 ORTHO05D009363 3.6e-09 65.1 48 72.9
Zm00001eb340660 Zea mays HOM05D007724 ORTHO05D009363 4.8e-09 64.7 43 83.7
Zm00001eb425330 Zea mays HOM05D007724 ORTHO05D009363 4.8e-09 64.7 43 83.7
Zm00001eb112860 Zea mays HOM05D007724 ORTHO05D009363 6.2e-09 64.3 42 76.2
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 8.1e-09 63.9 43 76.7
Zm00001eb235960 Zea mays HOM05D007724 ORTHO05D009363 8.1e-09 63.9 48 75.0
Zm00001eb386600 Zea mays HOM05D007724 ORTHO05D009363 8.1e-09 63.9 42 78.6
Zm00001eb364550 Zea mays HOM05D007724 ORTHO05D009363 1.4e-08 63.2 48 75.0
Zm00001eb389510 Zea mays HOM05D007724 ORTHO05D009363 1.4e-08 63.2 37 86.5
Zm00001eb413060 Zea mays HOM05D007724 ORTHO05D009363 1.8e-08 62.8 42 78.6
Zm00001eb410810 Zea mays HOM05D007724 ORTHO05D009363 2.4e-08 62.4 43 81.4
Zm00001eb094830 Zea mays HOM05D007724 ORTHO05D009363 3.1e-08 62.0 47 74.5
Zm00001eb115070 Zea mays HOM05D007724 ORTHO05D009363 3.1e-08 62.0 48 75.0
Zm00001eb136520 Zea mays HOM05D007724 ORTHO05D009363 4.0e-08 61.6 39 82.1
QL03p019108 Quercus lobata HOM05D000389 ORTHO05D000287 5.3e-08 61.2 43 67.4
Zm00001eb039580 Zea mays HOM05D007724 ORTHO05D009363 5.3e-08 61.2 36 86.1
Zm00001eb279080 Zea mays HOM05D007724 ORTHO05D009363 5.3e-08 61.2 43 79.1
Zm00001eb040960 Zea mays HOM05D007724 ORTHO05D009363 6.9e-08 60.8 42 73.8
Zm00001eb006780 Zea mays HOM05D000100 ORTHO05D000052 9.0e-08 60.5 48 75.0
Zm00001eb284660 Zea mays HOM05D007724 ORTHO05D009363 1.2e-07 60.1 43 79.1
Zm00001eb297710 Zea mays HOM05D007724 ORTHO05D009363 1.2e-07 60.1 46 73.9
CiPaw.07G025100 Carya illinoinensis HOM05D000389 ORTHO05D000287 2.6e-07 58.9 43 67.4
Zm00001eb036500 Zea mays HOM05D007724 ORTHO05D009363 2.6e-07 58.9 48 68.8
Actinidia21505 Actinidia chinensis HOM05D000389 ORTHO05D000287 3.4e-07 58.5 43 67.4
Hma1.2p1_1441F.1_g283650 Hydrangea macrophylla HOM05D000389 ORTHO05D000287 3.4e-07 58.5 43 67.4
TAR633G1297 Trochodendron aralioides HOM05D000389 ORTHO05D000287 3.4e-07 58.5 43 65.1
Sed0001426 Sechium edule HOM05D000389 ORTHO05D000287 5.8e-07 57.8 43 65.1
CSS0000277 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 7.6e-07 57.4 43 65.1
CSS0020870 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 7.6e-07 57.4 43 65.1
Manes.03G199700 Manihot esculenta HOM05D000389 ORTHO05D000287 7.6e-07 57.4 43 60.5
Os05g0358500 Oryza sativa ssp. japonica HOM05D000389 ORTHO05D000287 7.6e-07 57.4 38 76.3
Zm00001eb121280 Zea mays HOM05D007724 ORTHO05D009363 7.6e-07 57.4 48 70.8
Lalb_Chr04g0260571 Lupinus albus HOM05D000389 ORTHO05D000287 9.9e-07 57.0 43 65.1
Sed0024880 Sechium edule HOM05D000389 ORTHO05D000287 9.9e-07 57.0 43 60.5
Zm00001eb047710 Zea mays HOM05D007724 ORTHO05D009363 9.9e-07 57.0 48 68.8
Zm00001eb061270 Zea mays HOM05D065094 ORTHO05D442690 9.9e-07 57.0 34 94.1
Dinv30843 Davidia involucrata HOM05D000389 ORTHO05D000287 1.3e-06 56.6 46 63.0
arahy.Tifrunner.gnm1.ann1.73HB7C Arachis hypogaea HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 60.5
arahy.Tifrunner.gnm1.ann1.KMJ8U9 Arachis hypogaea HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 62.8
ClCG02G015200 Citrullus lanatus HOM05D000389 ORTHO05D000287 1.7e-06 56.2 38 73.7
ClCG03G017610 Citrullus lanatus HOM05D000389 ORTHO05D000287 1.7e-06 56.2 44 63.6
Glyma.03G233500 Glycine max HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 62.8
Glyma.19G230600 Glycine max HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 62.8
Nn4g25724 Nelumbo nucifera HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 62.8
PSO210G3855 Papaver somniferum HOM05D000389 ORTHO05D000287 1.7e-06 56.2 39 66.7
Rhsim05G0136100 Rhododendron simsii HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 62.8
HPP92_006908 Vanilla planifolia HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 65.1
HPP92_025198 Vanilla planifolia HOM05D000389 ORTHO05D000287 1.7e-06 56.2 43 60.5
arahy.Tifrunner.gnm1.ann1.WF4DDX Arachis hypogaea HOM05D000389 ORTHO05D000287 2.2e-06 55.8 43 58.1
Glyma.10G150100 Glycine max HOM05D000389 ORTHO05D000287 2.2e-06 55.8 43 60.5
Glyma.20G238100 Glycine max HOM05D000389 ORTHO05D000287 2.2e-06 55.8 43 60.5
Zm00001eb281650 Zea mays HOM05D007724 ORTHO05D445957 2.2e-06 55.8 44 75.0
ATR0706G215 Amborella trichopoda HOM05D000389 ORTHO05D000287 2.9e-06 55.5 39 71.8
CSS0006988 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.9e-06 55.5 43 60.5
CSS0046840 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.9e-06 55.5 43 62.8
Lsat_1_v5_gn_9_123920 Lactuca sativa HOM05D000389 ORTHO05D000287 2.9e-06 55.5 41 63.4
Lalb_Chr15g0077521 Lupinus albus HOM05D000389 ORTHO05D000287 2.9e-06 55.5 43 62.8
vmacro08102 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 2.9e-06 55.5 43 60.5
GSVIVG01035094001 Vitis vinifera HOM05D000389 ORTHO05D000287 2.9e-06 55.5 41 63.4
Zm00001eb109760 Zea mays HOM05D007724 ORTHO05D009363 2.9e-06 55.5 41 73.2
Zm00001eb123120 Zea mays HOM05D007724 ORTHO05D009363 2.9e-06 55.5 36 77.8
Cc03_g01410 Coffea canephora HOM05D000389 ORTHO05D000287 3.8e-06 55.1 43 62.8
DCAR_029374 Daucus carota HOM05D000389 ORTHO05D000287 3.8e-06 55.1 43 62.8
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 3.8e-06 55.1 43 60.5
Duzib106G1919 Durio zibethinus HOM05D000389 ORTHO05D000287 3.8e-06 55.1 43 62.8
Oeu054007.1 Olea europaea HOM05D000389 ORTHO05D000287 3.8e-06 55.1 43 60.5
Phvul.007G198700 Phaseolus vulgaris HOM05D000389 ORTHO05D000287 3.8e-06 55.1 41 65.9
Thecc.05G317200 Theobroma cacao HOM05D000389 ORTHO05D000287 3.8e-06 55.1 43 62.8
VMungo0720G1502 Vigna mungo HOM05D000389 ORTHO05D000287 3.8e-06 55.1 41 65.9
Zm00001eb140770 Zea mays HOM05D007724 ORTHO05D446486 3.8e-06 55.1 48 66.7
Zm00001eb201790 Zea mays HOM05D007724 ORTHO05D009363 3.8e-06 55.1 40 72.5
Zm00001eb280590 Zea mays HOM05D065094 ORTHO05D443127 3.8e-06 55.1 34 88.2
Rhsim07G0194600 Rhododendron simsii HOM05D000389 ORTHO05D000287 4.9e-06 54.7 43 58.1
SalBow2G2191 Salvia bowleyana HOM05D000389 ORTHO05D000287 4.9e-06 54.7 39 64.1
Zm00001eb013310 Zea mays HOM05D002416 ORTHO05D002554 4.9e-06 54.7 32 87.5
Zm00001eb267760 Zea mays HOM05D007724 ORTHO05D009363 4.9e-06 54.7 42 71.4
CSS0012770 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 6.4e-06 54.3 43 58.1
Gohir.A11G270500 Gossypium hirsutum HOM05D000389 ORTHO05D000287 6.4e-06 54.3 43 60.5
Gorai.007G302900 Gossypium raimondii HOM05D000389 ORTHO05D000287 6.4e-06 54.3 43 60.5
Lj1g0024341 Lotus japonicus HOM05D000389 ORTHO05D000287 6.4e-06 54.3 43 60.5
Rhsim04G0227900 Rhododendron simsii HOM05D000389 ORTHO05D000287 6.4e-06 54.3 43 60.5
TAR362G0079 Trochodendron aralioides HOM05D000389 ORTHO05D000287 6.4e-06 54.3 43 58.1
VMungo1215G1406 Vigna mungo HOM05D000389 ORTHO05D000287 6.4e-06 54.3 41 61.0
Aa31LG11G9650 Aethionema arabicum HOM05D000389 ORTHO05D000287 8.4e-06 53.9 41 65.9
Aqoxy2G02872 Aquilegia oxysepala HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 58.1
CSS0013620 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 60.5
Dinv24405 Davidia involucrata HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 60.5
Lj5g0004732 Lotus japonicus HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 58.1
Lalb_Chr06g0167601 Lupinus albus HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 60.5
MD04G1197100 Malus domestica HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 60.5
Medtr1g083690 Medicago truncatula HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 60.5
Peaxi162Scf00065g01020 Petunia axillaris HOM05D000389 ORTHO05D000287 8.4e-06 53.9 41 63.4
Potri.005G021900 Populus trichocarpa HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 60.5
Prupe.6G317600 Prunus persica HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 60.5
Sabra05G0027800 Salix brachista HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 58.1
TWI09G0112 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 8.4e-06 53.9 43 62.8


User provided reference genes

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