Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.7e-84 315.8 148 100.0
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.0e-76 290.0 148 91.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 2.5e-59 232.3 139 74.8
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.5e-53 211.8 125 72.8
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-52 209.1 125 71.2
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.1e-51 206.8 131 68.7
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.1e-51 206.8 111 87.4
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.2e-51 204.1 132 68.9
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.2e-50 203.4 129 69.8
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.2e-50 203.4 129 69.0
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.6e-50 203.0 129 66.7
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-50 201.8 125 68.8
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.6e-50 201.8 140 66.4
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.7e-50 201.4 129 65.9
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 2.3e-49 199.1 136 64.0
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-49 198.7 125 68.0
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 5.2e-49 198.0 129 67.4
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 8.8e-49 197.2 129 64.3
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.2e-48 196.8 136 63.2
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.5e-48 196.4 128 66.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.5e-48 196.4 132 65.2
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.5e-48 196.4 129 66.7
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.5e-48 196.4 131 65.6
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.5e-48 196.4 129 67.4
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.5e-48 196.4 129 67.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.5e-48 196.4 129 67.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.6e-48 195.7 129 65.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.6e-48 195.7 131 64.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.6e-48 195.7 131 65.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 3.4e-48 195.3 129 67.4
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.4e-48 194.9 129 66.7
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.7e-48 194.5 129 65.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 7.5e-48 194.1 139 63.3
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 9.8e-48 193.7 131 65.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 9.8e-48 193.7 136 61.8
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 9.8e-48 193.7 134 61.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.3e-47 193.4 131 66.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-47 192.6 116 70.7
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.2e-47 192.6 129 64.3
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.8e-47 192.2 129 66.7
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.7e-47 191.8 130 66.2
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.7e-47 191.8 128 64.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.8e-47 191.4 129 64.3
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 4.8e-47 191.4 129 65.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.8e-47 191.4 129 65.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 6.3e-47 191.0 129 63.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 8.3e-47 190.7 131 63.4
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-46 190.3 129 64.3
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.4e-46 189.9 129 64.3
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.4e-46 189.9 100 84.0
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.8e-46 189.5 129 65.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.8e-46 189.5 129 61.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.8e-46 189.5 129 64.3
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.8e-46 189.5 136 59.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.8e-46 189.5 131 63.4
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.4e-46 189.1 129 64.3
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.4e-46 189.1 130 65.4
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.4e-46 189.1 132 63.6
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.1e-46 188.7 129 63.6
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 3.1e-46 188.7 139 60.4
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 3.1e-46 188.7 128 65.6
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 4.1e-46 188.3 124 65.3
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 4.1e-46 188.3 129 62.8
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 4.1e-46 188.3 129 62.8
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 4.1e-46 188.3 133 62.4
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 4.1e-46 188.3 131 62.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 5.4e-46 188.0 129 64.3
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.4e-46 188.0 132 64.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 7.0e-46 187.6 129 64.3
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 7.0e-46 187.6 131 63.4
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 7.0e-46 187.6 129 62.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.1e-46 187.2 132 63.6
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 9.1e-46 187.2 130 65.4
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 9.1e-46 187.2 131 63.4
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 9.1e-46 187.2 130 61.5
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.2e-45 186.8 131 63.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.6e-45 186.4 129 65.1
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.0e-45 186.0 129 62.0
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.0e-45 186.0 129 64.3
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.7e-45 185.7 128 64.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.7e-45 185.7 133 61.7
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 2.7e-45 185.7 139 61.2
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 3.5e-45 185.3 129 62.8
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 3.5e-45 185.3 129 62.8
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.5e-45 185.3 132 61.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 4.5e-45 184.9 129 63.6
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 4.5e-45 184.9 129 62.0
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 5.9e-45 184.5 128 62.5
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 5.9e-45 184.5 129 64.3
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 5.9e-45 184.5 131 61.1
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.0e-44 183.7 128 63.3
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.0e-44 183.7 133 60.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.3e-44 183.3 129 62.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.7e-44 183.0 133 60.2
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 2.3e-44 182.6 131 62.6
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.9e-44 182.2 128 60.2
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.9e-44 182.2 128 60.2
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 2.9e-44 182.2 131 61.1
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 2.9e-44 182.2 123 65.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.8e-44 181.8 133 60.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 3.8e-44 181.8 127 61.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 5.0e-44 181.4 129 63.6
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 6.5e-44 181.0 129 61.2
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 6.5e-44 181.0 124 63.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.6e-44 180.6 116 68.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 8.6e-44 180.6 131 59.5
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.1e-43 180.3 128 62.5
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.9e-43 179.5 129 60.5
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 3.3e-43 178.7 128 61.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.6e-42 176.4 117 65.8
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.6e-42 176.4 129 63.6
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.1e-42 176.0 117 65.8
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.6e-42 175.3 134 57.5
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.6e-42 175.3 133 58.6
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.7e-42 174.9 132 59.8
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 8.0e-42 174.1 133 58.6
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.4e-41 173.3 120 65.8
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.3e-41 172.6 131 59.5
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 4.0e-41 171.8 117 65.0
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 4.0e-41 171.8 131 58.0
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 6.8e-41 171.0 129 58.9
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.5e-40 169.9 121 62.0
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.5e-40 169.9 116 66.4
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 4.4e-40 168.3 118 62.7
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.5e-40 167.5 129 58.1
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.3e-39 166.8 111 65.8
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 4.9e-39 164.9 164 49.4
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 8.3e-39 164.1 129 56.6
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 5.4e-38 161.4 133 54.1
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.2e-38 160.6 125 57.6
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-37 159.8 125 54.4
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 3.5e-37 158.7 123 60.2
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.7e-36 156.4 129 55.8
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.1e-35 153.7 131 54.2
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 9.5e-35 150.6 116 62.1
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.2e-33 144.8 114 59.6
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.7e-31 138.7 132 52.3
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.0e-29 132.9 116 54.3
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.6e-29 131.7 85 68.2
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.0e-28 130.6 140 47.9
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 6.6e-28 127.9 96 60.4
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 3.6e-26 122.1 93 57.0
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-25 120.2 96 58.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 3.4e-24 115.5 80 67.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.4e-24 115.2 75 69.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.6e-19 98.2 106 46.2
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.3e-19 97.8 74 60.8
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.8e-17 91.3 63 65.1
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-16 90.5 73 56.2
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 9.9e-16 87.4 74 55.4


User provided reference genes

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