Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb099160 Zea mays HOM05D003797 ORTHO05D004370 1.3e-46 189.5 103 100.0
Zm00001eb312010 Zea mays HOM05D003797 ORTHO05D004370 4.1e-45 184.5 103 97.1
Os09g0396900 Oryza sativa ssp. japonica HOM05D003797 ORTHO05D004370 2.2e-38 162.2 103 83.5
Os04g0463400 Oryza sativa ssp. japonica HOM05D003797 ORTHO05D004370 5.6e-34 147.5 101 74.3
Zm00001eb424350 Zea mays HOM05D003797 ORTHO05D004370 2.1e-33 145.6 101 77.2
PSO732G0427 Papaver somniferum HOM05D003797 ORTHO05D004370 2.3e-32 142.1 101 72.3
MBI19_g09381_MAGBIO Magnolia biondii HOM05D003797 ORTHO05D004370 1.2e-31 139.8 101 69.3
PSO675G2134 Papaver somniferum HOM05D003797 ORTHO05D004370 1.5e-31 139.4 101 70.3
Aqoxy3G04068 Aquilegia oxysepala HOM05D003797 ORTHO05D004370 3.4e-31 138.3 100 73.0
ECA234G4680 Erigeron canadensis HOM05D003797 ORTHO05D004370 3.4e-31 138.3 103 67.0
MELO3C005259.2 Cucumis melo HOM05D003797 ORTHO05D004370 4.4e-31 137.9 100 68.0
Dinv26370 Davidia involucrata HOM05D003797 ORTHO05D004370 5.8e-31 137.5 100 69.0
PSO732G0533 Papaver somniferum HOM05D003797 ORTHO05D004370 7.5e-31 137.1 101 68.3
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 9.9e-31 136.7 100 68.0
CsaV3_5G014530 Cucumis sativus L. HOM05D003797 ORTHO05D004370 9.9e-31 136.7 100 68.0
Eucgr.B02690 Eucalyptus grandis HOM05D003797 ORTHO05D004370 9.9e-31 136.7 103 69.9
Actinidia36612 Actinidia chinensis HOM05D003797 ORTHO05D004370 1.3e-30 136.3 100 69.0
FAN07G0297 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.3e-30 136.3 99 68.7
HanXRQChr09g0251961 Helianthus annuus HOM05D003797 ORTHO05D004370 1.3e-30 136.3 100 69.0
HanXRQChr16g0527241 Helianthus annuus HOM05D003797 ORTHO05D004370 1.3e-30 136.3 100 69.0
PGR102G0637 Punica granatum HOM05D003797 ORTHO05D004370 1.3e-30 136.3 100 68.0
CsaV3_5G027940 Cucumis sativus L. HOM05D003797 ORTHO05D004370 2.2e-30 135.6 100 66.0
FvH4_4g33340 Fragaria vesca HOM05D003797 ORTHO05D004370 2.2e-30 135.6 99 68.7
FAN12G0353 Fragaria x ananassa HOM05D003797 ORTHO05D004370 2.2e-30 135.6 99 68.7
FAN22G2109 Fragaria x ananassa HOM05D003797 ORTHO05D004370 2.2e-30 135.6 99 68.7
Sed0007838 Sechium edule HOM05D003797 ORTHO05D004370 2.2e-30 135.6 100 67.0
QL03p037712 Quercus lobata HOM05D003797 ORTHO05D004370 2.9e-30 135.2 99 68.7
MSTRG.2118 Avicennia marina HOM05D003797 ORTHO05D004370 3.7e-30 134.8 100 67.0
Dinv03968 Davidia involucrata HOM05D003797 ORTHO05D004370 4.9e-30 134.4 100 67.0
Dinv06119 Davidia involucrata HOM05D003797 ORTHO05D004370 4.9e-30 134.4 100 67.0
Migut.E00497 Erythranthe guttata HOM05D003797 ORTHO05D004370 4.9e-30 134.4 100 67.0
PSO675G5697 Papaver somniferum HOM05D003797 ORTHO05D004370 4.9e-30 134.4 101 66.3
ClCG07G005420 Citrullus lanatus HOM05D003797 ORTHO05D004370 6.4e-30 134.0 100 66.0
HanXRQChr12g0383081 Helianthus annuus HOM05D003797 ORTHO05D004370 6.4e-30 134.0 100 68.0
RcHm_v2.0_Chr4g0442611 Rosa chinensis HOM05D003797 ORTHO05D004370 6.4e-30 134.0 99 67.7
Eucgr.G02084 Eucalyptus grandis HOM05D003797 ORTHO05D004370 8.3e-30 133.7 97 69.1
Eucgr.L02831 Eucalyptus grandis HOM05D003797 ORTHO05D004370 8.3e-30 133.7 97 69.1
Nn3g18415 Nelumbo nucifera HOM05D003797 ORTHO05D004370 8.3e-30 133.7 101 67.3
Nitab4.5_0003619g0020 Nicotiana tabacum HOM05D003797 ORTHO05D004370 8.3e-30 133.7 100 67.0
arahy.Tifrunner.gnm1.ann1.Q36DTI Arachis hypogaea HOM05D000005 ORTHO05D004370 1.1e-29 133.3 98 66.3
Cpa.g.sc2.168 Carica papaya HOM05D003797 ORTHO05D004370 1.1e-29 133.3 99 65.7
Nitab4.5_0002414g0010 Nicotiana tabacum HOM05D003797 ORTHO05D004370 1.1e-29 133.3 100 67.0
Sabra10G0076600 Salix brachista HOM05D003797 ORTHO05D004370 1.1e-29 133.3 99 69.7
TWI74G1086 Tripterygium wilfordii HOM05D003797 ORTHO05D004370 1.1e-29 133.3 100 67.0
arahy.Tifrunner.gnm1.ann1.2L3ISV Arachis hypogaea HOM05D003797 ORTHO05D004370 1.4e-29 132.9 98 66.3
FAN17G2298 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.4e-29 132.9 99 66.7
Glyma.08G047500 Glycine max HOM05D003797 ORTHO05D004370 1.4e-29 132.9 98 66.3
Manes.15G136600 Manihot esculenta HOM05D003797 ORTHO05D004370 1.4e-29 132.9 101 65.3
Peaxi162Scf00337g00715 Petunia axillaris HOM05D003797 ORTHO05D004370 1.4e-29 132.9 100 67.0
TPR.G19268 Trifolium pratense HOM05D003797 ORTHO05D004370 1.4e-29 132.9 101 66.3
Cc11_g06660 Coffea canephora HOM05D003797 ORTHO05D004370 1.9e-29 132.5 100 67.0
Psat7g007520 Pisum sativum HOM05D003797 ORTHO05D004370 1.9e-29 132.5 98 68.4
Duzib251G0134 Durio zibethinus HOM05D003797 ORTHO05D004370 2.4e-29 132.1 99 66.7
PGR142G2609 Punica granatum HOM05D003797 ORTHO05D004370 2.4e-29 132.1 101 65.3
Rhsim09G0088200 Rhododendron simsii HOM05D003797 ORTHO05D004370 2.4e-29 132.1 100 67.0
Atru.chr11.837 Acer truncatum HOM05D003797 ORTHO05D004370 3.2e-29 131.7 97 68.0
CiPaw.06G054700 Carya illinoinensis HOM05D003797 ORTHO05D004370 3.2e-29 131.7 99 67.7
FAN17G0483 Fragaria x ananassa HOM05D003797 ORTHO05D004370 3.2e-29 131.7 101 67.3
Potri.010G104200 Populus trichocarpa HOM05D003797 ORTHO05D004370 3.2e-29 131.7 99 66.7
ATR0118G024 Amborella trichopoda HOM05D003797 ORTHO05D004370 4.1e-29 131.3 100 69.0
AUR62012750 Chenopodium quinoa HOM05D003797 ORTHO05D004370 4.1e-29 131.3 100 66.0
AUR62021908 Chenopodium quinoa HOM05D003797 ORTHO05D004370 4.1e-29 131.3 100 66.0
Medtr8g105790 Medicago truncatula HOM05D003797 ORTHO05D004370 4.1e-29 131.3 98 67.3
unitig_22.g5605 Utricularia gibba HOM05D003797 ORTHO05D004370 4.1e-29 131.3 101 65.3
Ciclev10016475m.g Citrus clementina HOM05D003797 ORTHO05D004370 5.4e-29 131.0 99 67.7
Lsat_1_v5_gn_4_23500 Lactuca sativa HOM05D003797 ORTHO05D004370 7.1e-29 130.6 100 66.0
VMungo0251G2898 Vigna mungo HOM05D003797 ORTHO05D004370 7.1e-29 130.6 98 65.3
Prupe.1G335200 Prunus persica HOM05D003797 ORTHO05D004370 1.2e-28 129.8 99 66.7
RcHm_v2.0_Chr4g0442571 Rosa chinensis HOM05D003797 ORTHO05D004370 1.2e-28 129.8 101 66.3
A02p32320 Brassica napus HOM05D003797 ORTHO05D004370 1.6e-28 129.4 100 64.0
C02p49920 Brassica napus HOM05D003797 ORTHO05D004370 1.6e-28 129.4 100 64.0
BolC2t11071H Brassica oleracea HOM05D003797 ORTHO05D004370 1.6e-28 129.4 100 64.0
BraA02t08249Z Brassica rapa HOM05D003797 ORTHO05D004370 1.6e-28 129.4 100 64.0
CSS0047498 Camellia sinensis var. sinensis HOM05D003797 ORTHO05D004370 1.6e-28 129.4 100 64.0
CiPaw.06G054800 Carya illinoinensis HOM05D003797 ORTHO05D004370 1.6e-28 129.4 100 66.0
Haze_10851 Corylus avellana HOM05D003797 ORTHO05D004370 1.6e-28 129.4 99 65.7
Dinv00922 Davidia involucrata HOM05D003797 ORTHO05D004370 1.6e-28 129.4 101 65.3
FAN12G2011 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.6e-28 129.4 101 66.3
FAN22G0305 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.6e-28 129.4 101 66.3
Lalb_Chr05g0222091 Lupinus albus HOM05D003797 ORTHO05D004370 1.6e-28 129.4 98 65.3
SGA_v2.0_scaffold23G10159 Striga asiatica HOM05D003797 ORTHO05D004370 1.6e-28 129.4 100 65.0
GSVIVG01011628001 Vitis vinifera HOM05D003797 ORTHO05D004370 1.6e-28 129.4 101 66.3
PSO339G4314 Papaver somniferum HOM05D003797 ORTHO05D004370 2.1e-28 129.0 102 66.7
RcHm_v2.0_Chr4g0442581 Rosa chinensis HOM05D003797 ORTHO05D004370 2.1e-28 129.0 101 66.3
Sed0023787 Sechium edule HOM05D003797 ORTHO05D004370 2.1e-28 129.0 101 64.4
Solyc04g008060.3 Solanum lycopersicum HOM05D003797 ORTHO05D004370 2.1e-28 129.0 100 65.0
Sopen04g003210 Solanum pennellii HOM05D003797 ORTHO05D004370 2.1e-28 129.0 100 65.0
PGSC0003DMG400029467 Solanum tuberosum HOM05D003797 ORTHO05D004370 2.1e-28 129.0 100 65.0
BcaC03g17074 Brassica carinata HOM05D003797 ORTHO05D004370 2.7e-28 128.6 100 64.0
HanXRQChr17g0565981 Helianthus annuus HOM05D003797 ORTHO05D004370 2.7e-28 128.6 100 64.0
MD16G1016500 Malus domestica HOM05D003797 ORTHO05D004370 2.7e-28 128.6 101 65.3
Phvul.002G322900 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 2.7e-28 128.6 98 64.3
QL03p037918 Quercus lobata HOM05D003797 ORTHO05D004370 2.7e-28 128.6 102 65.7
CDE05G1216 Ceratophyllum demersum HOM05D003797 ORTHO05D004370 3.5e-28 128.3 101 61.4
DCAR_023568 Daucus carota HOM05D003797 ORTHO05D004370 3.5e-28 128.3 100 65.0
Gohir.A13G027600 Gossypium hirsutum HOM05D003797 ORTHO05D004370 3.5e-28 128.3 99 64.6
SMO169G0175 Selaginella moellendorffii HOM05D003797 ORTHO05D004370 3.5e-28 128.3 99 67.7
SEGI_33821 Sequoiadendron giganteum HOM05D003797 ORTHO05D004370 3.5e-28 128.3 100 64.0
unitig_8.g4013 Utricularia gibba HOM05D003797 ORTHO05D004370 3.5e-28 128.3 100 66.0
CAN.G74.19 Capsicum annuum HOM05D003797 ORTHO05D004370 4.6e-28 127.9 100 64.0
CDE05G1112 Ceratophyllum demersum HOM05D003797 ORTHO05D004370 4.6e-28 127.9 101 61.4
Ca_17254_v3 Cicer arietinum L. HOM05D003797 ORTHO05D004370 4.6e-28 127.9 98 65.3
Atru.chr11.843 Acer truncatum HOM05D003797 ORTHO05D004370 6.0e-28 127.5 100 66.0
Atru.chr11.849 Acer truncatum HOM05D003797 ORTHO05D004370 6.0e-28 127.5 100 66.0
Glyma.05G240600 Glycine max HOM05D003797 ORTHO05D004370 6.0e-28 127.5 98 63.3
MD13G1018700 Malus domestica HOM05D003797 ORTHO05D004370 6.0e-28 127.5 99 65.7
MD16G1016600 Malus domestica HOM05D003797 ORTHO05D004370 6.0e-28 127.5 99 64.6
SEGI_29045 Sequoiadendron giganteum HOM05D003797 ORTHO05D004370 6.0e-28 127.5 99 63.6
CANSAT78G0734 Cannabis sativa HOM05D003797 ORTHO05D004370 7.8e-28 127.1 100 63.0
Nn3g18418 Nelumbo nucifera HOM05D003797 ORTHO05D004370 7.8e-28 127.1 101 63.4
PSO384G3089 Papaver somniferum HOM05D003797 ORTHO05D004370 7.8e-28 127.1 102 65.7
Thecc.02G308100 Theobroma cacao HOM05D003797 ORTHO05D004370 7.8e-28 127.1 99 64.6
HPP92_023443 Vanilla planifolia HOM05D003797 ORTHO05D004370 7.8e-28 127.1 103 63.1
HPP92_023452 Vanilla planifolia HOM05D003797 ORTHO05D004370 7.8e-28 127.1 103 63.1
Ah.09g234580 Amaranthus hybridus HOM05D003797 ORTHO05D004370 1.0e-27 126.7 100 64.0
Cfa015046 Carpinus fangiana HOM05D003797 ORTHO05D004370 1.0e-27 126.7 99 63.6
Gorai.013G029700 Gossypium raimondii HOM05D003797 ORTHO05D004370 1.0e-27 126.7 99 63.6
Hma1.2p1_0234F.1_g098420 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 1.0e-27 126.7 100 63.0
LjContig00081g0026703 Lotus japonicus HOM05D003797 ORTHO05D004370 1.0e-27 126.7 98 64.3
SalBow2G0350 Salvia bowleyana HOM05D003797 ORTHO05D004370 1.0e-27 126.7 100 62.0
TAR629G0971 Trochodendron aralioides HOM05D003797 ORTHO05D004370 1.0e-27 126.7 100 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2367 Anthoceros agrestis HOM05D003797 ORTHO05D004370 1.3e-27 126.3 99 62.6
FAN07G2428 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.3e-27 126.3 101 65.3
Manes.17G085600 Manihot esculenta HOM05D003797 ORTHO05D004370 1.3e-27 126.3 97 64.9
Ah.14g087870 Amaranthus hybridus HOM05D003797 ORTHO05D004370 1.7e-27 125.9 100 64.0
MELO3C005260.2 Cucumis melo HOM05D003797 ORTHO05D004370 1.7e-27 125.9 101 62.4
CsaV3_5G027930 Cucumis sativus L. HOM05D003797 ORTHO05D004370 1.7e-27 125.9 101 62.4
BcaB07g30374 Brassica carinata HOM05D003797 ORTHO05D004370 2.3e-27 125.6 100 62.0
Ciclev10017583m.g Citrus clementina HOM05D003797 ORTHO05D004370 2.3e-27 125.6 101 63.4
Potri.010G104100 Populus trichocarpa HOM05D003797 ORTHO05D004370 2.3e-27 125.6 101 62.4
Prupe.1G335300 Prunus persica HOM05D003797 ORTHO05D004370 2.3e-27 125.6 101 62.4
CANSAT78G1947 Cannabis sativa HOM05D003797 ORTHO05D004370 3.0e-27 125.2 103 63.1
COL.COLO4_27615 Corchorus olitorius HOM05D003797 ORTHO05D004370 3.0e-27 125.2 99 64.6
Duzib268G1244 Durio zibethinus HOM05D003797 ORTHO05D004370 3.0e-27 125.2 99 64.6
Gohir.D13G026400 Gossypium hirsutum HOM05D003797 ORTHO05D004370 3.0e-27 125.2 99 62.6
Lj3A863T39 Lonicera japonica HOM05D003797 ORTHO05D004370 3.0e-27 125.2 97 63.9
Pp3c2_34540 Physcomitrium patens HOM05D003797 ORTHO05D004370 3.0e-27 125.2 101 61.4
Mapoly0116s0023 Marchantia polymorpha HOM05D003797 ORTHO05D004370 3.9e-27 124.8 101 61.4
Medtr8g105810 Medicago truncatula HOM05D003797 ORTHO05D004370 5.1e-27 124.4 98 63.3
Oeu006298.1 Olea europaea HOM05D003797 ORTHO05D004370 5.1e-27 124.4 100 61.0
Duzib248G0263 Durio zibethinus HOM05D003797 ORTHO05D004370 6.6e-27 124.0 99 62.6
Sp2g13230 Schrenkiella parvula HOM05D003797 ORTHO05D004370 6.6e-27 124.0 100 62.0
unitig_27.g25168 Utricularia gibba HOM05D003797 ORTHO05D004370 8.6e-27 123.6 100 63.0
Thhalv10005591m.g Eutrema salsugineum HOM05D003797 ORTHO05D004370 1.5e-26 122.9 100 61.0
Aa31LG2G8120 Aethionema arabicum HOM05D003797 ORTHO05D004370 1.9e-26 122.5 99 62.6
CARHR144350 Cardamine hirsuta HOM05D003797 ORTHO05D004370 1.9e-26 122.5 100 61.0
THA.LOC104823632 Tarenaya hassleriana HOM05D003797 ORTHO05D004370 1.9e-26 122.5 100 62.0
A06p44090 Brassica napus HOM05D003797 ORTHO05D004370 2.5e-26 122.1 100 60.0
BraA06t27283Z Brassica rapa HOM05D003797 ORTHO05D004370 2.5e-26 122.1 100 60.0
Phvul.002G322800 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 2.5e-26 122.1 95 64.2
SHI04334 Sapria himalayana HOM05D003797 ORTHO05D004370 2.5e-26 122.1 101 60.4
VMungo0251G2644 Vigna mungo HOM05D003797 ORTHO05D004370 2.5e-26 122.1 96 64.6
BcaC06g31278 Brassica carinata HOM05D003797 ORTHO05D004370 5.6e-26 120.9 99 61.6
AT2G01770 Arabidopsis thaliana HOM05D003797 ORTHO05D004370 1.2e-25 119.8 100 59.0
AL5G10900 Arabidopsis lyrata HOM05D003797 ORTHO05D004370 1.6e-25 119.4 100 59.0
Eucgr.B02691 Eucalyptus grandis HOM05D003797 ORTHO05D004370 2.1e-25 119.0 97 62.9
Nn3g18417 Nelumbo nucifera HOM05D003797 ORTHO05D004370 8.1e-25 117.1 99 61.6
Carub.0005s0073 Capsella rubella HOM05D003797 ORTHO05D004370 1.1e-24 116.7 100 58.0
Thecc.02G307900 Theobroma cacao HOM05D003797 ORTHO05D004370 1.1e-24 116.7 100 57.0
BcaB05g24664 Brassica carinata HOM05D003797 ORTHO05D004370 1.8e-24 115.9 100 58.0
Duzib251G0065 Durio zibethinus HOM05D003797 ORTHO05D004370 5.2e-24 114.4 100 58.0
ClCG01G006640 Citrullus lanatus HOM05D003797 ORTHO05D004370 1.2e-23 113.2 91 62.6
COL.COLO4_27614 Corchorus olitorius HOM05D003797 ORTHO05D004370 2.6e-23 112.1 100 58.0
Sed0010431 Sechium edule HOM05D003797 ORTHO05D004370 5.8e-23 110.9 100 61.0
Hma1.2p1_0940F.1_g239510 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 6.4e-22 107.5 99 53.5
Hma1.2p1_1538F.1_g289560 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 6.4e-22 107.5 99 53.5
Haze_10850 Corylus avellana HOM05D003797 ORTHO05D004370 2.3e-19 99.0 75 64.0
GSVIVG01011629001 Vitis vinifera HOM05D003797 ORTHO05D004370 6.6e-19 97.4 70 70.0
Nn4g24451 Nelumbo nucifera HOM05D003797 ORTHO05D004370 2.8e-17 92.0 70 62.9
EL10Ac8g20121 Beta vulgaris HOM05D003797 ORTHO05D004370 6.0e-12 74.3 100 46.0
Atru.chr11.846 Acer truncatum HOM05D003797 ORTHO05D004370 7.8e-12 73.9 100 46.0
MD15G1227000 Malus domestica HOM05D000981 ORTHO05D000845 8.4e-06 53.9 85 43.5


User provided reference genes

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