Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 8.9e-179 630.2 324 100.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.4e-85 318.9 315 53.0
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.6e-80 302.0 316 51.6
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 9.5e-80 301.2 314 52.2
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.4e-78 297.4 319 50.5
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.2e-77 294.3 315 49.2
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.8e-77 292.0 315 49.5
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 2.4e-75 286.6 316 48.4
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 3.2e-75 286.2 316 48.4
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 7.1e-75 285.0 315 48.9
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 9.2e-75 284.6 316 49.1
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 7.8e-74 281.6 318 49.1
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 3.0e-73 279.6 317 47.6
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 6.6e-73 278.5 315 46.3
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 6.6e-73 278.5 316 47.5
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.6e-71 273.9 317 48.3
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 2.8e-71 273.1 315 47.0
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 6.2e-71 271.9 315 45.4
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.8e-70 270.4 315 44.8
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-70 270.0 316 46.8
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.1e-70 269.6 316 45.3
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 8.9e-70 268.1 317 45.7
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-69 266.5 315 46.3
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.4e-69 266.2 316 44.6
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.4e-69 266.2 315 46.0
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.4e-69 265.8 315 46.0
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 4.4e-69 265.8 313 45.0
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 5.8e-69 265.4 315 45.1
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.7e-68 263.8 315 45.7
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.9e-68 262.3 312 47.8
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.4e-67 260.8 329 43.5
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 5.4e-67 258.8 314 45.9
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.7e-66 256.5 316 43.0
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.7e-66 256.5 313 45.7
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 3.5e-66 256.1 317 42.9
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 4.6e-66 255.8 315 45.4
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 6.0e-66 255.4 317 43.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 7.8e-66 255.0 314 43.6
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.3e-65 254.2 314 42.7
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.0e-65 253.1 316 43.7
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 3.9e-65 252.7 315 44.4
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 3.9e-65 252.7 318 43.7
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.9e-65 252.7 316 42.7
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 6.6e-65 251.9 322 45.3
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.1e-64 251.1 315 44.4
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.5e-64 250.8 318 43.4
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.5e-64 250.0 316 43.4
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.3e-64 249.2 316 42.7
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.3e-64 249.2 316 42.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 5.6e-64 248.8 316 43.0
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.3e-64 248.4 314 42.0
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-63 247.7 314 41.1
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-63 247.7 314 41.1
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.6e-63 247.3 314 42.7
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.1e-63 246.9 317 43.8
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.1e-63 246.9 316 41.8
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.8e-63 246.5 316 42.7
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 6.2e-63 245.4 318 43.4
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 6.2e-63 245.4 341 41.1
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 8.1e-63 245.0 316 42.1
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-62 244.6 316 41.1
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.4e-62 244.2 316 42.7
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.4e-62 244.2 316 44.3
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.8e-62 243.8 314 42.7
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.8e-62 243.8 316 41.1
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.0e-62 242.7 316 43.0
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 6.8e-62 241.9 314 44.3
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.8e-62 241.9 314 44.3
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.9e-62 241.5 314 43.9
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.0e-61 240.4 314 41.7
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.6e-61 240.0 315 41.0
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 7.6e-61 238.4 316 41.5
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.3e-60 237.7 316 41.5
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.7e-60 237.3 314 41.4
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.9e-60 236.5 314 42.7
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.9e-60 236.5 313 43.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.9e-60 236.5 319 41.4
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.8e-60 236.1 319 42.6
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 3.8e-60 236.1 314 41.4
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 8.4e-60 235.0 315 41.6
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 8.4e-60 235.0 316 42.4
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.9e-59 233.8 316 40.2
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 3.2e-59 233.0 314 41.1
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 4.2e-59 232.6 352 38.4
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.1e-58 230.3 316 39.6
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.7e-58 229.9 283 43.8
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 3.5e-58 229.6 318 39.9
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 6.0e-58 228.8 318 41.5
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 6.0e-58 228.8 289 42.9
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.0e-57 228.0 314 39.8
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-57 227.6 316 38.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 2.3e-57 226.9 316 41.1
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.0e-57 226.5 317 39.7
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.0e-57 226.5 314 40.1
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 8.7e-57 224.9 316 38.9
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.1e-56 224.6 316 38.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.1e-56 224.6 319 39.5
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-56 224.6 317 39.7
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 7.3e-56 221.9 317 39.7
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 9.6e-56 221.5 309 41.4
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.3e-55 221.1 318 39.9
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.1e-55 220.3 316 38.9
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 2.1e-55 220.3 314 39.2
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.6e-55 219.5 332 38.3
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 4.8e-55 219.2 317 39.4
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 4.8e-55 219.2 317 39.4
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.8e-55 219.2 315 38.7
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 6.2e-55 218.8 315 40.0
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.2e-55 218.8 298 41.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 8.1e-55 218.4 313 39.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 3.1e-54 216.5 326 37.7
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.1e-54 216.5 318 39.3
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.3e-54 215.7 316 38.3
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.0e-53 213.8 354 36.2
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 3.4e-53 213.0 306 40.2
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 7.6e-53 211.8 314 37.3
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.9e-52 209.1 354 36.4
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 6.4e-52 208.8 351 35.9
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 8.4e-52 208.4 406 34.7
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 7.1e-51 205.3 316 38.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 7.1e-51 205.3 303 38.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.1e-50 203.8 301 37.9
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.1e-50 203.8 303 38.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.1e-50 203.8 303 38.0
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.7e-49 200.7 427 32.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 3.0e-49 199.9 323 35.3
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 9.6e-48 194.9 315 36.5
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 9.0e-46 188.3 234 42.7
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 7.6e-45 185.3 297 36.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.9e-45 184.9 324 35.8
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.9e-44 183.3 320 35.0
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 2.9e-44 183.3 232 42.2
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 3.8e-44 183.0 316 36.4
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 8.4e-44 181.8 323 35.0
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.2e-42 177.9 324 34.6
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.2e-42 177.9 323 36.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.9e-42 175.3 314 33.8
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.8e-39 166.0 210 44.8
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.8e-38 164.1 495 27.5
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.0e-38 162.9 210 44.3
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 4.0e-38 162.9 313 31.9
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.9e-35 154.1 203 41.4
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 9.6e-32 141.7 312 31.1
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 3.7e-31 139.8 153 45.8
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 6.2e-31 139.0 207 39.6
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.1e-30 138.3 241 35.3
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 9.0e-30 135.2 172 46.5
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-29 133.7 193 43.0
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.8e-29 132.5 153 45.8
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.6e-29 132.1 155 45.2
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.3e-28 131.3 208 37.0
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.0e-28 129.4 152 44.1
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 6.5e-28 129.0 167 46.7
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.5e-27 127.1 152 44.1
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 4.2e-27 126.3 152 44.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.3e-25 121.3 188 38.3
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.8e-25 120.9 160 41.9
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.7e-24 115.2 104 53.8
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 9.7e-24 115.2 279 29.7
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-23 114.4 103 54.4
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.7e-23 113.2 117 48.7
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.7e-23 113.2 110 50.9
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-22 111.7 113 48.7
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.4e-22 110.5 110 50.0
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.3e-22 109.4 104 51.9
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.5e-21 107.8 110 49.1
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.5e-21 107.8 139 42.4
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.9e-20 103.6 137 40.9
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 3.8e-20 103.2 139 40.3
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.5e-19 99.4 152 38.2
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 9.4e-19 98.6 207 28.5
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.6e-18 97.8 100 50.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 8.2e-15 85.5 70 62.9
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.5e-13 81.3 313 25.6
Zm00001eb375900 Zea mays HOM05D025264 ORTHO05D442363 2.7e-10 70.5 65 61.5
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.0e-08 64.3 66 47.0


User provided reference genes

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