Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb097980 Zea mays HOM05D000389 ORTHO05D443129 2.3e-58 228.8 122 100.0
Zm00001eb034100 Zea mays HOM05D000389 ORTHO05D000287 3.8e-29 131.7 103 76.7
Zm00001eb199570 Zea mays HOM05D000389 ORTHO05D000287 4.2e-20 101.7 101 58.4
Os08g0500300 Oryza sativa ssp. japonica HOM05D000389 ORTHO05D000287 1.8e-10 69.7 120 45.0
Peaxi162Scf00156g00313 Petunia axillaris HOM05D000389 ORTHO05D000287 3.7e-08 62.0 94 42.6
Gorai.010G138600 Gossypium raimondii HOM05D000389 ORTHO05D000287 4.0e-07 58.5 90 40.0
SEGI_24076 Sequoiadendron giganteum HOM05D000389 ORTHO05D000287 4.0e-07 58.5 92 35.9
SGA_v2.0_scaffold62G21497 Striga asiatica HOM05D000389 ORTHO05D000287 5.3e-07 58.2 92 44.6
Actinidia03282 Actinidia chinensis HOM05D000389 ORTHO05D000287 6.9e-07 57.8 95 43.2
Gohir.D13G091500 Gossypium hirsutum HOM05D000389 ORTHO05D000287 6.9e-07 57.8 90 40.0
Nitab4.5_0001235g0040 Nicotiana tabacum HOM05D000389 ORTHO05D000287 6.9e-07 57.8 96 40.6
CAN.G943.22 Capsicum annuum HOM05D000389 ORTHO05D000287 9.0e-07 57.4 91 41.8
Sopen05g034200 Solanum pennellii HOM05D000389 ORTHO05D000287 9.0e-07 57.4 98 40.8
vmacro19614 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 9.0e-07 57.4 94 40.4
Manes.12G005000 Manihot esculenta HOM05D000389 ORTHO05D000287 1.5e-06 56.6 98 40.8
CSS0010757 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.0e-06 56.2 50 52.0
CiPaw.08G114600 Carya illinoinensis HOM05D000389 ORTHO05D000287 2.0e-06 56.2 98 40.8
EL10Ac4g09993 Beta vulgaris HOM05D000389 ORTHO05D000287 2.6e-06 55.8 90 43.3
Duzib235G0812 Durio zibethinus HOM05D000389 ORTHO05D000287 2.6e-06 55.8 97 41.2
Lj1A903T66 Lonicera japonica HOM05D000389 ORTHO05D000287 2.6e-06 55.8 47 57.4
PGSC0003DMG400023473 Solanum tuberosum HOM05D000389 ORTHO05D000287 2.6e-06 55.8 98 39.8
TWI18G1423 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 2.6e-06 55.8 98 39.8
ClCG11G009750 Citrullus lanatus HOM05D000389 ORTHO05D000287 3.4e-06 55.5 91 41.8
Gohir.A13G086390 Gossypium hirsutum HOM05D000389 ORTHO05D000287 3.4e-06 55.5 90 38.9
Manes.13G005000 Manihot esculenta HOM05D000389 ORTHO05D000287 3.4e-06 55.5 98 39.8
Manes.18G141025 Manihot esculenta HOM05D000389 ORTHO05D011980 3.4e-06 55.5 94 40.4
Potri.013G085500 Populus trichocarpa HOM05D000389 ORTHO05D000287 3.4e-06 55.5 102 40.2
Sabra19G0063200 Salix brachista HOM05D000389 ORTHO05D000287 3.4e-06 55.5 98 39.8
HPP92_009937 Vanilla planifolia HOM05D000389 ORTHO05D000287 3.4e-06 55.5 97 37.1
MD04G1245600 Malus domestica HOM05D000389 ORTHO05D000287 4.5e-06 55.1 97 41.2
Nitab4.5_0000611g0140 Nicotiana tabacum HOM05D000389 ORTHO05D000287 4.5e-06 55.1 50 58.0
Nitab4.5_0004488g0040 Nicotiana tabacum HOM05D000389 ORTHO05D000287 4.5e-06 55.1 50 58.0
Potri.019G054200 Populus trichocarpa HOM05D000389 ORTHO05D000287 4.5e-06 55.1 102 39.2
Sp1g14440 Schrenkiella parvula HOM05D000389 ORTHO05D000287 4.5e-06 55.1 39 64.1
Sopen07g034440 Solanum pennellii HOM05D000389 ORTHO05D000287 4.5e-06 55.1 97 40.2
TWI75G1435 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 4.5e-06 55.1 98 38.8
Actinidia06801 Actinidia chinensis HOM05D000389 ORTHO05D000287 5.8e-06 54.7 94 39.4
Ah.04g159030 Amaranthus hybridus HOM05D000389 ORTHO05D000287 5.8e-06 54.7 93 40.9
Duzib160G0103 Durio zibethinus HOM05D000389 ORTHO05D000287 5.8e-06 54.7 81 43.2
Duzib177G1054 Durio zibethinus HOM05D000389 ORTHO05D000287 5.8e-06 54.7 98 40.8
ECA240G4412 Erigeron canadensis HOM05D000389 ORTHO05D000287 5.8e-06 54.7 74 45.9
HanXRQChr02g0032441 Helianthus annuus HOM05D000389 ORTHO05D000287 5.8e-06 54.7 97 39.2
Nitab4.5_0000294g0130 Nicotiana tabacum HOM05D000389 ORTHO05D000287 5.8e-06 54.7 98 38.8
PSO063G3932 Papaver somniferum HOM05D000389 ORTHO05D000287 5.8e-06 54.7 40 62.5
PSO782G2973 Papaver somniferum HOM05D000389 ORTHO05D000287 5.8e-06 54.7 40 62.5
PGSC0003DMG400022137 Solanum tuberosum HOM05D000389 ORTHO05D000287 5.8e-06 54.7 97 36.1
CAN.G492.65 Capsicum annuum HOM05D000389 ORTHO05D000287 7.6e-06 54.3 89 38.2
CAN.G694.20 Capsicum annuum HOM05D000389 ORTHO05D000287 7.6e-06 54.3 96 38.5
Duzib128G0731 Durio zibethinus HOM05D000389 ORTHO05D000287 7.6e-06 54.3 94 38.3
Glyma.09G249700 Glycine max HOM05D000389 ORTHO05D000287 7.6e-06 54.3 93 41.9
Lsat_1_v5_gn_2_15001 Lactuca sativa HOM05D000389 ORTHO05D000287 7.6e-06 54.3 98 39.8
Lsat_1_v5_gn_9_88341 Lactuca sativa HOM05D000389 ORTHO05D000287 7.6e-06 54.3 66 48.5
Sabra13G0078200 Salix brachista HOM05D000389 ORTHO05D000287 7.6e-06 54.3 101 38.6
ATR0215G014 Amborella trichopoda HOM05D000389 ORTHO05D000287 1.0e-05 53.9 94 39.4
CSS0002035 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 1.0e-05 53.9 96 40.6
ECA238G4511 Erigeron canadensis HOM05D000389 ORTHO05D000287 1.0e-05 53.9 99 38.4
Nitab4.5_0000971g0030 Nicotiana tabacum HOM05D000389 ORTHO05D000287 1.0e-05 53.9 94 40.4
Nitab4.5_0008294g0010 Nicotiana tabacum HOM05D000389 ORTHO05D000287 1.0e-05 53.9 94 40.4
Peaxi162Scf00232g01012 Petunia axillaris HOM05D000389 ORTHO05D000287 1.0e-05 53.9 87 40.2
Sed0021090 Sechium edule HOM05D000389 ORTHO05D000287 1.0e-05 53.9 91 40.7


User provided reference genes

Program Settings