Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 3.1e-93 345.1 173 100.0
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.5e-50 201.4 157 64.3
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 7.1e-50 201.1 157 64.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 4.3e-47 191.8 163 61.3
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.6e-46 189.9 162 61.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 2.2e-46 189.5 158 60.1
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.8e-46 189.1 93 98.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 4.8e-46 188.3 154 61.0
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 8.2e-46 187.6 160 58.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.1e-45 187.2 160 59.4
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.1e-45 187.2 158 57.6
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.4e-45 186.8 156 61.5
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.4e-45 186.8 159 59.7
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.6e-44 182.6 159 59.1
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.6e-44 182.6 158 58.2
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 4.5e-44 181.8 160 57.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 4.5e-44 181.8 156 59.0
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 5.9e-44 181.4 164 57.3
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.9e-44 181.4 156 57.7
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 7.7e-44 181.0 158 58.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 7.7e-44 181.0 159 58.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 7.7e-44 181.0 168 60.7
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.0e-43 180.6 165 58.8
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.0e-43 180.6 165 58.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.0e-43 180.6 159 56.6
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.0e-43 180.6 159 57.9
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.7e-43 179.9 159 58.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.2e-43 179.5 165 58.2
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.2e-43 179.5 160 56.9
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 2.9e-43 179.1 158 57.6
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.9e-43 179.1 160 56.9
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.5e-43 177.9 159 57.9
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 6.5e-43 177.9 157 58.0
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 6.5e-43 177.9 164 56.1
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.1e-42 177.2 162 58.0
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.4e-42 176.8 163 57.1
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.4e-42 176.8 156 57.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.4e-42 176.8 158 57.6
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.5e-42 176.0 155 57.4
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 3.2e-42 175.6 158 57.0
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 3.2e-42 175.6 159 56.0
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.5e-42 174.9 160 56.9
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 7.2e-42 174.5 159 56.0
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.2e-42 174.5 151 57.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 9.4e-42 174.1 155 58.1
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 9.4e-42 174.1 159 57.2
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.6e-41 173.3 159 55.3
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 2.7e-41 172.6 157 56.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.6e-41 172.2 159 54.7
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 3.6e-41 172.2 161 57.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.6e-41 171.8 174 52.9
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.1e-41 171.4 159 55.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.1e-41 171.4 160 55.6
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.9e-41 171.0 161 57.1
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.0e-40 170.6 159 56.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.4e-40 170.2 158 53.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.4e-40 170.2 159 55.3
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.4e-40 170.2 163 54.6
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.8e-40 169.9 155 56.8
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.8e-40 169.9 159 53.5
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.3e-40 169.5 157 56.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 2.3e-40 169.5 163 52.8
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 3.0e-40 169.1 165 53.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.0e-40 169.1 161 57.1
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 3.0e-40 169.1 155 54.8
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.0e-40 169.1 157 56.7
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.9e-40 168.7 159 54.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 3.9e-40 168.7 158 55.1
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 3.9e-40 168.7 158 55.7
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 5.1e-40 168.3 157 57.3
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 6.7e-40 167.9 159 53.5
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.7e-40 167.9 157 54.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.7e-40 167.9 157 54.1
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 6.7e-40 167.9 161 55.9
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.5e-39 166.0 159 55.3
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.3e-39 165.6 164 53.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.3e-39 165.2 160 53.8
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 5.7e-39 164.9 160 53.1
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.7e-39 164.9 160 53.1
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 5.7e-39 164.9 160 53.1
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.7e-39 164.9 157 52.9
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 5.7e-39 164.9 158 54.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.4e-39 164.5 158 53.8
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 7.4e-39 164.5 159 53.5
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 7.4e-39 164.5 170 52.4
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 9.7e-39 164.1 155 54.8
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 9.7e-39 164.1 160 52.5
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 9.7e-39 164.1 155 53.5
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-38 163.7 161 50.9
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.2e-38 162.9 159 52.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.8e-38 162.5 160 52.5
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.8e-38 162.5 159 54.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.8e-38 162.5 159 54.7
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.8e-38 162.5 163 55.2
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.7e-38 162.2 163 52.8
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.7e-38 162.2 160 52.5
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.3e-38 161.4 173 50.3
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.3e-38 161.4 161 52.2
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 8.2e-38 161.0 161 52.8
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.1e-37 160.6 155 53.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.1e-37 160.6 155 54.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-37 159.8 159 53.5
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 4.1e-37 158.7 162 49.4
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-36 157.1 125 63.2
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.5e-36 156.8 164 51.8
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 4.5e-36 155.2 163 50.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.2e-35 152.9 150 53.3
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 3.8e-35 152.1 160 48.8
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 3.8e-35 152.1 160 48.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 4.2e-34 148.7 159 48.4
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.1e-33 146.4 157 47.8
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.1e-33 144.8 158 50.6
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.1e-33 144.8 161 52.2
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.4e-32 143.7 123 55.3
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.9e-32 142.1 118 57.6
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-31 140.6 128 52.3
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 5.7e-31 138.3 127 55.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.2e-30 136.3 98 63.3
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-29 134.0 111 57.7
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.8e-29 133.3 123 57.7
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 2.4e-29 132.9 129 56.6
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 7.0e-29 131.3 154 42.2
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-28 130.2 120 55.0
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 7.7e-28 127.9 128 51.6
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 7.7e-28 127.9 164 44.5
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.5e-27 124.4 120 48.3
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.1e-26 124.0 128 51.6
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.2e-26 122.5 124 51.6
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.5e-26 121.7 107 54.2
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 7.2e-26 121.3 164 41.5
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.1e-25 119.8 138 44.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.4e-24 117.1 155 38.7
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.0e-24 115.9 95 70.5
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.2e-24 115.2 120 45.0
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.1e-23 114.0 145 46.9
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.7e-23 111.7 136 39.7
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.7e-22 110.2 171 42.7
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 5.3e-21 105.1 78 65.4
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.6e-20 103.6 164 42.7
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.0e-20 103.2 164 43.3
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.5e-20 102.1 164 42.7
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.8e-19 99.0 94 53.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.5e-18 96.3 113 50.4
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.6e-17 93.6 163 39.9
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 8.8e-16 87.8 65 56.9
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 4.4e-15 85.5 101 43.6
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 8.3e-14 81.3 100 43.0
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.4e-13 79.7 63 55.6
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.0e-11 74.3 119 35.3
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 5.5e-10 68.6 101 38.6
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.8e-08 63.5 79 54.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.2e-08 62.0 63 47.6
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.0e-07 60.1 61 57.4
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.7e-06 57.0 104 29.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.7e-06 57.0 161 33.5


User provided reference genes

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