Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb097710 Zea mays HOM05D006123 ORTHO05D007578 1.9e-173 612.5 319 100.0
Os09g0512700 Oryza sativa ssp. japonica HOM05D006123 ORTHO05D007578 2.2e-68 263.5 227 65.6
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 1.6e-66 257.3 227 65.2
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 2.1e-55 220.3 210 61.0
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 1.7e-52 210.7 208 57.2
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 2.0e-50 203.8 223 53.8
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 4.5e-50 202.6 228 52.6
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 1.7e-49 200.7 228 54.4
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 2.9e-49 199.9 228 52.2
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 5.0e-49 199.1 208 56.2
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 6.5e-49 198.7 223 52.0
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 1.1e-48 198.0 228 51.8
GSVIVG01001139001 Vitis vinifera HOM05D006123 ORTHO05D007578 1.2e-47 194.5 228 52.2
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 2.1e-47 193.7 278 44.6
Sabra03G0115100 Salix brachista HOM05D006123 ORTHO05D007578 2.7e-47 193.4 228 52.6
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 3.6e-47 193.0 228 49.1
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 4.7e-47 192.6 228 50.4
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 4.7e-47 192.6 228 50.4
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 6.1e-47 192.2 211 53.1
SGA_v2.0_scaffold258G45757 Striga asiatica HOM05D006123 ORTHO05D007578 6.1e-47 192.2 207 54.6
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 1.4e-46 191.0 206 53.9
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 1.8e-46 190.7 228 50.9
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 2.3e-46 190.3 228 50.0
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 2.3e-46 190.3 227 50.7
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 4.0e-46 189.5 228 48.7
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 5.2e-46 189.1 223 49.3
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 6.8e-46 188.7 211 54.5
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 6.8e-46 188.7 211 53.1
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 8.8e-46 188.3 228 49.6
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 1.2e-45 188.0 216 50.5
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 2.6e-45 186.8 228 50.0
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 4.4e-45 186.0 223 46.2
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 4.4e-45 186.0 227 48.9
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 5.7e-45 185.7 214 48.6
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 5.7e-45 185.7 228 51.8
DCAR_023486 Daucus carota HOM05D006123 ORTHO05D007578 7.5e-45 185.3 222 50.5
Lj3C1079T4 Lonicera japonica HOM05D006123 ORTHO05D007578 7.5e-45 185.3 226 51.3
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 9.8e-45 184.9 228 48.2
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 9.8e-45 184.9 211 53.6
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 9.8e-45 184.9 211 53.6
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 9.8e-45 184.9 211 53.6
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 9.8e-45 184.9 214 48.1
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 9.8e-45 184.9 214 48.1
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 1.7e-44 184.1 214 48.1
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 1.7e-44 184.1 228 48.2
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 1.7e-44 184.1 223 50.2
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 2.2e-44 183.7 214 47.7
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 2.8e-44 183.3 228 48.2
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 2.8e-44 183.3 223 48.4
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 4.9e-44 182.6 228 49.6
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 4.9e-44 182.6 211 51.2
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 4.9e-44 182.6 228 47.8
FAN12G4288 Fragaria x ananassa HOM05D006123 ORTHO05D007578 8.3e-44 181.8 228 47.8
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 1.1e-43 181.4 223 49.8
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 1.1e-43 181.4 228 47.4
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 1.4e-43 181.0 211 51.2
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 1.4e-43 181.0 212 50.5
unitig_749.g13336 Utricularia gibba HOM05D006123 ORTHO05D007578 1.4e-43 181.0 240 47.5
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 1.8e-43 180.6 223 46.2
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 1.8e-43 180.6 228 47.4
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 1.8e-43 180.6 213 52.1
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 1.8e-43 180.6 211 51.7
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 2.4e-43 180.3 211 50.7
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 3.1e-43 179.9 228 49.6
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 3.1e-43 179.9 208 51.4
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 4.1e-43 179.5 211 51.7
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 4.1e-43 179.5 228 47.4
Phvul.006G013100 Phaseolus vulgaris HOM05D006123 ORTHO05D007578 4.1e-43 179.5 211 53.1
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 5.4e-43 179.1 223 47.5
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 5.4e-43 179.1 228 47.8
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 5.4e-43 179.1 228 46.9
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 7.0e-43 178.7 213 52.1
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 9.2e-43 178.3 224 49.6
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 9.2e-43 178.3 211 51.7
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 2.0e-42 177.2 212 50.9
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 3.5e-42 176.4 223 48.0
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 4.5e-42 176.0 218 47.2
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 5.9e-42 175.6 212 50.9
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 7.7e-42 175.3 211 49.8
PGSC0003DMG400032561 Solanum tuberosum HOM05D006123 ORTHO05D007578 1.0e-41 174.9 224 47.8
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 1.3e-41 174.5 269 43.1
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 2.3e-41 173.7 228 45.6
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 2.3e-41 173.7 218 49.5
MBI11_g04258_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 3.8e-41 172.9 193 53.4
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 3.8e-41 172.9 261 44.8
Sopen04g004440 Solanum pennellii HOM05D006123 ORTHO05D007578 5.0e-41 172.6 224 46.9
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 5.0e-41 172.6 206 51.0
CAN.G624.16 Capsicum annuum HOM05D006123 ORTHO05D007578 1.1e-40 171.4 211 47.4
SMO367G0194 Selaginella moellendorffii HOM05D006123 ORTHO05D007578 1.1e-40 171.4 208 48.6
Pp3c20_2600 Physcomitrium patens HOM05D006123 ORTHO05D007578 1.5e-40 171.0 208 47.6
Solyc04g009320.3 Solanum lycopersicum HOM05D006123 ORTHO05D007578 2.5e-40 170.2 224 46.4
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 3.3e-40 169.9 223 47.5
PGSC0003DMG400013211 Solanum tuberosum HOM05D006123 ORTHO05D007578 4.3e-40 169.5 211 48.3
Ca_16273_v3 Cicer arietinum L. HOM05D006123 ORTHO05D007578 2.3e-38 163.7 206 49.5
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 4.0e-38 162.9 213 45.1
Mapoly0124s0025 Marchantia polymorpha HOM05D006123 ORTHO05D007578 6.8e-38 162.2 214 45.8
CSS0017548 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 3.7e-36 156.4 195 49.7
Potri.003G158701 Populus trichocarpa HOM05D006123 ORTHO05D007578 1.4e-35 154.5 185 53.0
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 5.4e-35 152.5 255 40.4
Lj2g0003712 Lotus japonicus HOM05D006123 ORTHO05D007578 1.2e-34 151.4 202 49.5
Thhalv10010449m.g Eutrema salsugineum HOM05D006123 ORTHO05D007578 7.8e-34 148.7 183 48.1
AUR62018638 Chenopodium quinoa HOM05D006123 ORTHO05D007578 1.3e-33 147.9 189 47.1
CBR_g16829 Chara braunii HOM05D006123 ORTHO05D007578 1.6e-31 141.0 207 39.1
vmacro15977 Vaccinium macrocarpon HOM05D006123 ORTHO05D007578 2.3e-30 137.1 377 31.6
Peaxi162Scf00760g00014 Petunia axillaris HOM05D006123 ORTHO05D007578 1.9e-27 127.5 174 46.6
Migut.H01174 Erythranthe guttata HOM05D006123 ORTHO05D007578 1.2e-21 108.2 139 50.4
Rhsim12G0090900 Rhododendron simsii HOM05D006123 ORTHO05D007578 7.5e-21 105.5 120 47.5
Nitab4.5_0007261g0070 Nicotiana tabacum HOM05D006123 ORTHO05D007578 2.2e-20 104.0 110 50.9
AUR62039304 Chenopodium quinoa HOM05D006123 ORTHO05D007578 6.0e-18 95.9 80 65.0
Glyma.20G054300 Glycine max HOM05D006123 ORTHO05D007578 6.0e-18 95.9 87 63.2
AagrBONN_evm.TU.Sc2ySwM_344.168 Anthoceros agrestis HOM05D006123 ORTHO05D007578 4.7e-15 86.3 211 29.4
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 6.2e-15 85.9 208 32.7
Lsat_1_v5_gn_6_11200 Lactuca sativa HOM05D001489 ORTHO05D007578 1.4e-14 84.7 186 35.5
Cre07.g323500 Chlamydomonas reinhardtii HOM05D006123 ORTHO05D007578 1.0e-09 68.6 211 26.1
SHI10577 Sapria himalayana HOM05D006123 ORTHO05D007578 2.3e-09 67.4 101 40.6
SHI51501 Sapria himalayana HOM05D006123 ORTHO05D007578 2.3e-09 67.4 101 40.6
Glyma.20G054400 Glycine max HOM05D006123 ORTHO05D007578 1.1e-08 65.1 83 47.0
Migut.J00308 Erythranthe guttata HOM05D003692 ORTHO05D004295 8.1e-07 58.9 210 30.5
Os03g0822700 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 8.9e-06 55.5 208 29.8


User provided reference genes

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