Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb096790 Zea mays HOM05D003748 ORTHO05D004108 2.5e-57 225.3 124 100.0
Zm00001eb306170 Zea mays HOM05D003748 ORTHO05D004108 1.1e-28 130.2 108 76.9
Os07g0438600 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 7.0e-15 84.3 61 68.9
Os03g0838500 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 8.0e-11 70.9 86 47.7
Sc23g0001260 Simmondsia chinensis HOM05D003748 ORTHO05D004108 1.4e-10 70.1 96 44.8
Phvul.007G245700 Phaseolus vulgaris HOM05D003748 ORTHO05D004108 6.8e-10 67.8 91 48.4
Ah.05g178170 Amaranthus hybridus HOM05D003748 ORTHO05D004108 8.8e-10 67.4 93 43.0
BcaB05g24695 Brassica carinata HOM05D003748 ORTHO05D004108 1.5e-09 66.6 88 46.6
CANSAT56G2356 Cannabis sativa HOM05D003748 ORTHO05D004108 2.6e-09 65.9 67 49.3
VMungo0720G2071 Vigna mungo HOM05D003748 ORTHO05D004108 2.6e-09 65.9 91 46.2
ATR0584G219 Amborella trichopoda HOM05D003748 ORTHO05D004108 3.4e-09 65.5 91 46.2
MD05G1041700 Malus domestica HOM05D003748 ORTHO05D004108 3.4e-09 65.5 93 46.2
RcHm_v2.0_Chr2g0129441 Rosa chinensis HOM05D003748 ORTHO05D004108 3.4e-09 65.5 95 41.1
CiPaw.07G159900 Carya illinoinensis HOM05D003748 ORTHO05D004108 4.4e-09 65.1 90 47.8
Sed0020042 Sechium edule HOM05D003748 ORTHO05D004108 5.7e-09 64.7 92 42.4
Zm00001eb211080 Zea mays HOM05D003748 ORTHO05D004108 5.7e-09 64.7 97 44.3
arahy.Tifrunner.gnm1.ann1.W37VG6 Arachis hypogaea HOM05D003748 ORTHO05D004108 9.8e-09 63.9 92 45.7
A02p17590 Brassica napus HOM05D003748 ORTHO05D004108 9.8e-09 63.9 91 44.0
BraA02t06805Z Brassica rapa HOM05D003748 ORTHO05D004108 9.8e-09 63.9 91 44.0
AUR62022695 Chenopodium quinoa HOM05D003748 ORTHO05D004108 9.8e-09 63.9 66 48.5
Dinv03390 Davidia involucrata HOM05D003748 ORTHO05D004108 9.8e-09 63.9 94 45.7
arahy.Tifrunner.gnm1.ann1.14DQKS Arachis hypogaea HOM05D003748 ORTHO05D004108 1.3e-08 63.5 65 55.4
arahy.Tifrunner.gnm1.ann1.V86M3D Arachis hypogaea HOM05D003748 ORTHO05D004108 1.3e-08 63.5 65 55.4
Lalb_Chr01g0010201 Lupinus albus HOM05D003748 ORTHO05D004108 1.3e-08 63.5 97 43.3
QL02p033706 Quercus lobata HOM05D003748 ORTHO05D004108 1.3e-08 63.5 82 42.7
MSTRG.22452 Avicennia marina HOM05D003748 ORTHO05D004108 1.7e-08 63.2 94 46.8
CARHR064760 Cardamine hirsuta HOM05D003748 ORTHO05D004108 1.7e-08 63.2 91 42.9
Lj7A290T41 Lonicera japonica HOM05D003748 ORTHO05D004108 1.7e-08 63.2 62 51.6
Nitab4.5_0000807g0010 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.7e-08 63.2 63 57.1
Hund16797 Selenicereus undatus HOM05D003748 ORTHO05D004108 1.7e-08 63.2 99 41.4
arahy.Tifrunner.gnm1.ann1.2U5UH6 Arachis hypogaea HOM05D003748 ORTHO05D004108 2.2e-08 62.8 94 41.5
CANSAT64G1217 Cannabis sativa HOM05D003748 ORTHO05D004108 2.2e-08 62.8 90 41.1
AUR62004641 Chenopodium quinoa HOM05D003748 ORTHO05D004108 2.2e-08 62.8 92 39.1
SalBow6G2274 Salvia bowleyana HOM05D003748 ORTHO05D004108 2.2e-08 62.8 62 56.5
CDE08G0273 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 2.8e-08 62.4 92 44.6
ClCG11G008120 Citrullus lanatus HOM05D003748 ORTHO05D004108 2.8e-08 62.4 101 44.6
Os05g0432700 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 2.8e-08 62.4 95 44.2
Prupe.8G057500 Prunus persica HOM05D003748 ORTHO05D004108 2.8e-08 62.4 97 44.3
AT1G71950 Arabidopsis thaliana HOM05D003748 ORTHO05D004108 3.7e-08 62.0 62 54.8
Dinv41714 Davidia involucrata HOM05D003748 ORTHO05D004108 3.7e-08 62.0 90 44.4
Eucgr.F02610 Eucalyptus grandis HOM05D003748 ORTHO05D004108 3.7e-08 62.0 88 46.6
FAN02G1714 Fragaria x ananassa HOM05D001133 ORTHO05D004108 3.7e-08 62.0 96 42.7
HPP92_001081 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.7e-08 62.0 65 58.5
EL10Ac1g00087 Beta vulgaris HOM05D003748 ORTHO05D004108 4.9e-08 61.6 91 36.3
BcaC03g15314 Brassica carinata HOM05D003748 ORTHO05D004108 4.9e-08 61.6 105 40.0
C02p29240 Brassica napus HOM05D003748 ORTHO05D004108 4.9e-08 61.6 105 40.0
BolC2t08974H Brassica oleracea HOM05D003748 ORTHO05D004108 4.9e-08 61.6 105 40.0
FvH4_6g27290 Fragaria vesca HOM05D003748 ORTHO05D004108 4.9e-08 61.6 96 41.7
MD10G1048200 Malus domestica HOM05D003748 ORTHO05D004108 4.9e-08 61.6 91 42.9
TAR381G1195 Trochodendron aralioides HOM05D003748 ORTHO05D004108 4.9e-08 61.6 62 53.2
Aqoxy5G02591 Aquilegia oxysepala HOM05D003748 ORTHO05D004108 6.3e-08 61.2 64 51.6
MBI09_g01930_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 6.3e-08 61.2 58 56.9
FAN05G3939 Fragaria x ananassa HOM05D003748 ORTHO05D004108 8.3e-08 60.8 96 41.7
FAN09G3472 Fragaria x ananassa HOM05D003748 ORTHO05D004108 8.3e-08 60.8 93 39.8
Hma1.2p1_0342F.1_g130730 Hydrangea macrophylla HOM05D003748 ORTHO05D004108 8.3e-08 60.8 93 45.2
PSO063G2175 Papaver somniferum HOM05D003748 ORTHO05D004108 8.3e-08 60.8 92 43.5
Thecc.08G183900 Theobroma cacao HOM05D003748 ORTHO05D004108 8.3e-08 60.8 93 43.0
Carub.0002s1873 Capsella rubella HOM05D003748 ORTHO05D004108 1.1e-07 60.5 92 43.5
Cfa013847 Carpinus fangiana HOM05D003748 ORTHO05D004108 1.1e-07 60.5 94 44.7
CDE06G2501 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 1.1e-07 60.5 89 44.9
Potri.019G083300 Populus trichocarpa HOM05D003748 ORTHO05D004108 1.1e-07 60.5 59 57.6
PGSC0003DMG400000891 Solanum tuberosum HOM05D003748 ORTHO05D004108 1.1e-07 60.5 62 56.5
COL.COLO4_04234 Corchorus olitorius HOM05D003748 ORTHO05D004108 1.4e-07 60.1 61 55.7
FAN14G5726 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.4e-07 60.1 96 40.6
Gorai.013G140200 Gossypium raimondii HOM05D003748 ORTHO05D004108 1.4e-07 60.1 78 47.4
Lalb_Chr19g0129451 Lupinus albus HOM05D003748 ORTHO05D004108 1.4e-07 60.1 89 41.6
Haze_22521 Corylus avellana HOM05D003748 ORTHO05D004108 1.8e-07 59.7 93 44.1
CsaV3_2G033500 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.8e-07 59.7 97 44.3
CsaV3_7G024410 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.8e-07 59.7 90 44.4
Gohir.D13G125300 Gossypium hirsutum HOM05D003748 ORTHO05D004108 1.8e-07 59.7 78 47.4
Nitab4.5_0000303g0140 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.8e-07 59.7 88 46.6
PSO017G4343 Papaver somniferum HOM05D003748 ORTHO05D004108 1.8e-07 59.7 92 42.4
SGA_v2.0_scaffold25G11069 Striga asiatica HOM05D003748 ORTHO05D004108 1.8e-07 59.7 92 44.6
Zm00001eb289210 Zea mays HOM05D003748 ORTHO05D004108 1.8e-07 59.7 92 45.7
AL2G31560 Arabidopsis lyrata HOM05D003748 ORTHO05D004108 2.4e-07 59.3 86 44.2
DCAR_014361 Daucus carota HOM05D003748 ORTHO05D004108 2.4e-07 59.3 62 50.0
Duzib177G0476 Durio zibethinus HOM05D003748 ORTHO05D004108 2.4e-07 59.3 93 45.2
Lj5g0010218 Lotus japonicus HOM05D003748 ORTHO05D004108 2.4e-07 59.3 58 55.2
Nn5g27683 Nelumbo nucifera HOM05D003748 ORTHO05D004108 2.4e-07 59.3 95 42.1
Peaxi162Scf00560g00736 Petunia axillaris HOM05D003748 ORTHO05D004108 2.4e-07 59.3 93 43.0
unitig_61.g26074 Utricularia gibba HOM05D003748 ORTHO05D004108 2.4e-07 59.3 94 43.6
GSVIVG01012792001 Vitis vinifera HOM05D003748 ORTHO05D004108 2.4e-07 59.3 71 46.5
MELO3C023644.2 Cucumis melo HOM05D003748 ORTHO05D004108 3.1e-07 58.9 98 44.9
Migut.N03349 Erythranthe guttata HOM05D003748 ORTHO05D004108 3.1e-07 58.9 91 44.0
Manes.02G192300 Manihot esculenta HOM05D003748 ORTHO05D004108 3.1e-07 58.9 85 45.9
Oeu039618.1 Olea europaea HOM05D003748 ORTHO05D004108 3.1e-07 58.9 90 42.2
TWI53G0775 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 3.1e-07 58.9 94 45.7
CSS0008856 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 4.1e-07 58.5 93 38.7
Oeu021207.1 Olea europaea HOM05D003748 ORTHO05D004108 4.1e-07 58.5 92 43.5
Sed0006671 Sechium edule HOM05D003748 ORTHO05D004108 4.1e-07 58.5 89 40.4
C06p46040 Brassica napus HOM05D003748 ORTHO05D004108 5.4e-07 58.2 62 50.0
Cc10_g10370 Coffea canephora HOM05D003748 ORTHO05D004108 5.4e-07 58.2 62 53.2
Lalb_Chr19g0129441 Lupinus albus HOM05D003748 ORTHO05D004108 5.4e-07 58.2 92 42.4
MBI16_g07669_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 5.4e-07 58.2 90 44.4
HPP92_025042 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.4e-07 58.2 60 55.0
Aa31LG4G8670 Aethionema arabicum HOM05D003748 ORTHO05D004108 7.0e-07 57.8 95 41.1
Glyma.02G158200 Glycine max HOM05D003748 ORTHO05D004108 7.0e-07 57.8 77 44.2
Rhsim06G0096300 Rhododendron simsii HOM05D003748 ORTHO05D004108 7.0e-07 57.8 62 48.4
TPR.G22711 Trifolium pratense HOM05D003748 ORTHO05D004108 7.0e-07 57.8 105 36.2
ClCG09G010270 Citrullus lanatus HOM05D003748 ORTHO05D004108 9.2e-07 57.4 64 50.0
MELO3C008123.2 Cucumis melo HOM05D003748 ORTHO05D004108 9.2e-07 57.4 97 44.3
MD11G1194700 Malus domestica HOM05D003748 ORTHO05D004108 9.2e-07 57.4 58 50.0
Medtr1g050640 Medicago truncatula HOM05D003748 ORTHO05D004108 9.2e-07 57.4 58 53.4
Ca_02751_v3 Cicer arietinum L. HOM05D003748 ORTHO05D004108 1.2e-06 57.0 91 42.9
ClCG09G010620 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.2e-06 57.0 71 46.5
Sabra13G0095600 Salix brachista HOM05D003748 ORTHO05D004108 1.2e-06 57.0 58 55.2
vmacro12490 Vaccinium macrocarpon HOM05D003748 ORTHO05D004108 1.2e-06 57.0 94 41.5
Actinidia02577 Actinidia chinensis HOM05D003748 ORTHO05D004108 1.6e-06 56.6 92 41.3
BcaC08g46634 Brassica carinata HOM05D003748 ORTHO05D004108 1.6e-06 56.6 62 50.0
BraA07t31377Z Brassica rapa HOM05D003748 ORTHO05D004108 1.6e-06 56.6 62 50.0
Thhalv10019318m.g Eutrema salsugineum HOM05D003748 ORTHO05D004108 1.6e-06 56.6 96 40.6
Oeu038195.1 Olea europaea HOM05D003748 ORTHO05D004108 1.6e-06 56.6 62 51.6
Psat6g091520 Pisum sativum HOM05D003748 ORTHO05D004108 1.6e-06 56.6 89 38.2
HPP92_003146 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.6e-06 56.6 65 50.8
BcaB03g14916 Brassica carinata HOM05D003748 ORTHO05D004108 2.0e-06 56.2 62 48.4
A07p38120 Brassica napus HOM05D003748 ORTHO05D004108 2.0e-06 56.2 62 48.4
ECA232G2068 Erigeron canadensis HOM05D003748 ORTHO05D004108 2.0e-06 56.2 60 48.3
Gohir.A13G121200 Gossypium hirsutum HOM05D003748 ORTHO05D004108 2.0e-06 56.2 90 43.3
Sabra11G0052500 Salix brachista HOM05D003748 ORTHO05D004108 2.0e-06 56.2 61 52.5
Sp5g27020 Schrenkiella parvula HOM05D003748 ORTHO05D004108 2.0e-06 56.2 91 45.1
Sopen11g009560 Solanum pennellii HOM05D003748 ORTHO05D004108 2.0e-06 56.2 64 53.1
TWI74G0020 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 2.0e-06 56.2 95 41.1
Peaxi162Scf00268g01130 Petunia axillaris HOM05D003748 ORTHO05D004108 2.7e-06 55.8 94 42.6
AagrBONN_evm.TU.Sc2ySwM_228.5131 Anthoceros agrestis HOM05D003748 ORTHO05D004108 3.5e-06 55.5 64 46.9
BcaC08g46636 Brassica carinata HOM05D003748 ORTHO05D004108 3.5e-06 55.5 92 40.2
BolC6t39656H Brassica oleracea HOM05D003748 ORTHO05D004108 3.5e-06 55.5 92 40.2
HanXRQChr09g0260341 Helianthus annuus HOM05D003748 ORTHO05D004108 3.5e-06 55.5 69 47.8
Sabra19G0072000 Salix brachista HOM05D003748 ORTHO05D004108 3.5e-06 55.5 61 52.5
THA.LOC104809742 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 3.5e-06 55.5 91 39.6
Manes.18G101100 Manihot esculenta HOM05D003748 ORTHO05D004108 4.5e-06 55.1 79 43.0
Sabra11G0051700 Salix brachista HOM05D000022 ORTHO05D000071 4.5e-06 55.1 71 43.7
HPP92_003143 Vanilla planifolia HOM05D003748 ORTHO05D004108 4.5e-06 55.1 92 43.5
CAN.G199.10 Capsicum annuum HOM05D003748 ORTHO05D004108 5.9e-06 54.7 94 39.4
Potri.013G112800 Populus trichocarpa HOM05D003748 ORTHO05D004108 5.9e-06 54.7 93 41.9
THA.LOC104800113 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 5.9e-06 54.7 102 39.2
HPP92_000073 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.9e-06 54.7 95 42.1
Cpa.g.sc66.42 Carica papaya HOM05D003748 ORTHO05D004108 7.7e-06 54.3 68 44.1
Sed0014127 Sechium edule HOM05D003748 ORTHO05D004108 7.7e-06 54.3 61 44.3
Solyc11g018590.1 Solanum lycopersicum HOM05D003748 ORTHO05D004108 7.7e-06 54.3 62 50.0


User provided reference genes

Program Settings