Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 0.0e+00 1620.1 892 100.0
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 0.0e+00 1237.6 891 77.9
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.9e-218 763.5 928 46.3
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.6e-217 760.4 900 48.0
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.3e-216 757.3 898 48.3
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 4.0e-213 745.7 909 47.3
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 4.0e-213 745.7 918 46.8
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.5e-212 743.8 906 46.8
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 2.6e-212 743.0 910 48.5
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 3.4e-212 742.7 908 47.5
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 4.4e-212 742.3 904 47.2
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 4.4e-212 742.3 889 47.5
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.3e-211 740.7 921 46.3
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.3e-211 740.7 907 47.5
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.3e-211 740.7 899 46.8
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 4.9e-211 738.8 929 46.1
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 8.4e-211 738.0 929 46.6
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 8.4e-211 738.0 922 49.0
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.1e-210 737.6 903 46.7
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 3.2e-210 736.1 901 46.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 3.5e-209 732.6 920 46.4
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 4.6e-209 732.3 912 46.5
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 4.6e-209 732.3 915 46.9
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 4.6e-209 732.3 899 48.7
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 7.8e-209 731.5 922 46.6
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.0e-208 731.1 929 45.0
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 3.9e-208 729.2 912 46.3
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 8.7e-208 728.0 903 46.7
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.1e-207 727.6 895 47.6
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.9e-207 726.9 800 50.1
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.9e-207 726.9 908 45.8
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 7.3e-207 724.9 917 47.3
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 9.6e-207 724.5 922 44.5
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 6.9e-205 718.4 934 46.4
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 2.6e-204 716.5 908 47.0
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.3e-203 714.1 914 49.1
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.2e-203 713.4 929 46.0
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.1e-202 711.1 914 46.2
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.4e-202 710.7 911 46.9
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-202 710.3 891 49.6
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.2e-201 707.6 898 45.4
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 1.3e-200 704.1 898 44.7
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.8e-200 703.7 906 46.8
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.8e-200 703.7 897 49.3
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.8e-200 703.7 906 49.2
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 1.8e-200 703.7 866 47.0
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 2.3e-200 703.4 899 49.8
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 3.0e-200 703.0 908 46.8
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 6.7e-200 701.8 905 48.7
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 8.7e-200 701.4 900 49.3
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 9.6e-199 698.0 913 45.6
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.8e-197 693.7 927 44.7
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 3.4e-196 689.5 891 48.8
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 7.6e-196 688.3 878 45.7
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.1e-194 684.5 918 46.1
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-194 683.7 725 55.4
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 1.5e-191 674.1 932 46.6
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 5.6e-191 672.2 909 49.0
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 4.8e-190 669.1 909 48.7
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 6.2e-190 668.7 894 44.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 6.2e-190 668.7 712 52.2
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.1e-189 667.9 903 48.4
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 9.0e-189 664.8 915 44.3
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 4.5e-188 662.5 989 43.0
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 6.0e-185 652.1 893 47.7
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 7.9e-185 651.7 898 44.2
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.5e-183 647.5 922 42.8
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 6.3e-182 642.1 669 50.8
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 6.9e-181 638.6 929 44.8
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.2e-180 637.9 939 46.6
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.2e-180 637.9 918 44.4
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 5.5e-178 629.0 898 41.6
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.6e-177 627.5 852 44.8
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.6e-177 627.5 889 43.3
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 2.3e-176 623.6 896 42.6
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 5.1e-176 622.5 911 44.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 3.3e-175 619.8 920 43.6
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 7.7e-172 608.6 785 47.9
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.1e-169 600.5 669 54.6
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 4.6e-169 599.4 910 46.5
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 3.3e-167 593.2 918 40.3
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.4e-167 592.8 694 48.7
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 4.1e-165 586.3 920 39.9
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 9.1e-165 585.1 905 42.8
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.5e-164 582.8 728 44.6
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 2.9e-163 580.1 743 49.4
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.9e-162 577.4 905 40.4
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 5.5e-162 575.9 779 44.8
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 3.6e-161 573.2 924 41.6
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 2.6e-159 567.0 747 43.9
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.1e-149 535.0 838 45.0
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 7.0e-149 532.3 917 39.8
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.0e-144 518.5 1001 36.9
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 8.3e-142 508.8 648 45.7
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.1e-141 508.4 491 53.8
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.8e-137 493.8 530 50.6
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.0e-136 491.9 505 52.7
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.4e-133 481.5 892 39.0
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 3.8e-131 473.4 904 39.2
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.6e-123 446.0 458 52.2
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.6e-121 441.4 440 53.4
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.7e-113 413.3 897 33.8
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.9e-110 404.1 810 37.4
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 4.9e-110 403.3 910 33.0
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 3.2e-109 400.6 412 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 6.8e-104 382.9 507 44.0
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 2.6e-87 327.8 350 48.6
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.2e-84 318.9 222 67.6
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.2e-84 318.9 222 67.6
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.5e-82 311.2 474 39.2
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-81 308.9 492 39.6
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 4.0e-80 303.9 472 42.2
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 3.4e-79 300.8 1031 26.7
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.3e-75 288.9 469 40.3
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 5.1e-75 287.0 528 36.2
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.3e-73 282.3 367 46.3
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-69 268.9 221 58.8
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-66 259.2 326 44.5
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-66 258.8 269 50.9
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-61 242.7 302 54.6
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.1e-60 236.9 466 34.5
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.4e-56 225.7 300 42.3
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-54 219.2 443 33.9
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 6.5e-54 216.9 476 35.1
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.1e-53 216.1 794 28.7
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.6e-52 212.2 245 48.6
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-51 209.1 396 37.4
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 7.0e-48 196.8 484 29.5
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.6e-47 194.9 249 45.0
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 2.6e-47 194.9 364 39.8
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.3e-43 181.8 344 34.9
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-41 176.0 421 34.0
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.4e-40 171.8 137 59.1
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.2e-38 165.2 185 48.1
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.8e-33 148.3 189 42.9
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-29 136.3 102 65.7
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 4.2e-29 134.4 582 24.6
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.4e-29 133.3 156 47.4
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.4e-29 133.3 156 47.4
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 3.6e-20 104.8 78 67.9
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-19 102.1 142 43.0
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.2e-18 99.8 582 22.5
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-17 95.9 169 38.5
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.7e-17 94.7 169 38.5
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 7.0e-16 90.5 108 48.1
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.1e-13 83.2 68 57.4
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.3e-13 81.6 161 34.2
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.6e-12 78.2 63 57.1
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-10 73.2 162 33.3
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 7.0e-08 63.9 133 35.3
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.5e-07 61.6 45 60.0


User provided reference genes

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