Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 3527.6 1787 100.0
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 1562.0 1833 46.9
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 1517.7 1833 45.7
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 1498.4 1834 44.8
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 1478.4 1833 43.8
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1473.8 1833 45.5
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 1460.3 1835 43.1
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1445.6 1724 46.4
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 1438.7 1841 43.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 1433.7 1831 42.9
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1426.8 1833 43.3
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1420.6 1830 43.2
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 1419.1 1822 43.2
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1419.1 1827 42.7
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 1417.5 1837 42.8
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 1414.8 1827 43.1
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1413.3 1833 43.2
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1412.9 1825 43.2
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 1409.4 1841 42.3
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 1407.5 1832 43.2
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 1405.2 1829 42.6
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 1404.4 1831 42.7
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1404.4 1828 43.2
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1395.9 1838 42.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1395.9 1827 42.7
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1393.6 1827 42.4
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1392.9 1826 42.9
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 1388.2 1832 42.4
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 1387.9 1917 41.7
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1387.5 1849 42.1
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1383.2 1826 42.1
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1382.5 1833 42.8
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1375.5 1826 42.3
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1375.5 1704 43.6
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1374.4 1838 41.9
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1372.5 1833 42.3
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1370.1 1838 42.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 1368.6 1862 41.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 1364.0 1837 42.6
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1363.6 1835 42.3
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1363.2 1838 42.2
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1362.1 1838 41.5
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1358.2 1825 41.4
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1358.2 1829 42.4
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1356.3 1820 41.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1354.7 1830 41.5
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1354.0 1827 41.1
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1353.2 1824 41.1
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1352.4 1834 41.8
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1352.0 1820 41.4
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1351.7 1838 41.9
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1347.0 1825 41.0
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1345.9 1820 40.8
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1344.7 1848 40.5
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1343.9 1852 42.2
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1343.9 1834 41.2
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1339.3 1827 40.9
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1338.9 1833 41.5
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1337.4 1823 40.8
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1335.5 1835 40.7
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1329.7 1849 40.4
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1327.4 1828 41.3
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1314.3 1836 41.3
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1312.7 1828 41.3
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1308.9 1824 41.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1306.2 1900 40.1
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1291.9 1873 39.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1288.5 2026 38.5
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1287.7 2034 38.0
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1270.0 2126 36.1
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1268.1 1810 40.3
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1254.6 1830 39.6
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1252.7 1827 39.9
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1247.3 1823 39.8
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1219.1 1813 40.0
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1208.0 1858 38.9
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1159.8 1470 42.9
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1147.1 1827 38.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 2.7e-301 1039.6 1272 44.7
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 6.0e-285 985.3 1864 34.9
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 5.6e-283 978.8 1902 33.5
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 7.1e-278 961.8 1145 44.9
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.4e-270 937.6 655 73.9
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 2.9e-263 913.3 1896 32.6
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 2.0e-259 900.6 1449 37.5
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.0e-255 888.3 1041 44.9
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 6.3e-234 815.8 1986 32.1
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.3e-218 765.0 1014 41.4
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.8e-196 691.4 1023 39.5
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 2.1e-192 677.9 930 40.6
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 2.7e-168 597.8 904 39.9
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.6e-168 597.0 853 40.0
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.6e-160 572.0 782 42.1
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.4e-151 542.3 771 39.4
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 7.7e-147 526.6 789 40.6
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 9.4e-145 519.6 831 38.4
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.3e-133 482.6 861 37.2
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.1e-116 426.4 632 38.3
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.2e-112 412.9 662 39.1
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 5.9e-107 394.0 536 42.9
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.2e-93 349.0 464 42.7
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.7e-88 331.3 437 41.9
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 6.2e-72 277.7 408 39.0
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.4e-71 275.8 381 39.1
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 9.3e-68 263.8 397 42.3
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 6.9e-63 247.7 341 40.8
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 2.1e-59 236.1 342 43.0
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 4.0e-55 221.9 266 42.9
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 4.6e-51 208.4 219 58.9
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.8e-50 206.5 122 82.8
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.8e-47 196.4 317 37.5
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 5.0e-45 188.3 520 31.3
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.3e-42 180.3 283 35.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 8.7e-42 177.6 178 49.4
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.9e-39 167.9 301 36.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.0e-38 166.4 231 39.8
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 2.0e-38 166.4 88 96.6
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.6e-38 166.0 330 33.3
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.7e-32 146.7 232 41.4
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 2.2e-32 146.4 193 43.0
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 2.8e-32 146.0 193 42.0
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.3e-29 137.1 76 90.8
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.4e-28 133.7 165 40.6
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.2e-24 119.8 135 48.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 6.3e-24 118.2 163 38.0
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.1e-23 117.5 124 49.2
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 5.3e-23 115.2 112 61.6
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.3e-17 95.9 153 41.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.7e-17 95.1 86 55.8
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 7.0e-15 88.2 101 45.5
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.6e-14 87.0 124 36.3
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 2.0e-14 86.7 125 35.2
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.7e-13 83.6 144 38.9
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.7e-13 83.6 99 37.4
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.6e-11 77.0 287 24.0
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 3.6e-11 75.9 92 42.4
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.5e-09 70.5 142 32.4
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 2.0e-09 70.1 93 38.7
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.8e-07 63.5 74 40.5
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.8e-07 63.5 74 40.5
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.1e-07 62.4 74 39.2
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.6e-06 60.5 114 30.7
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 7.7e-06 58.2 72 41.7


User provided reference genes

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