Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 0.0e+00 2401.3 1178 100.0
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 0.0e+00 1114.4 1166 53.3
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 2.5e-122 444.5 1344 28.7
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.6e-116 425.2 1335 28.5
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.6e-116 423.7 1236 29.5
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 6.0e-116 423.3 1300 27.4
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 3.9e-115 420.6 1367 28.0
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 6.7e-115 419.9 1263 28.7
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 2.8e-113 414.5 1401 27.6
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 4.8e-113 413.7 1361 28.9
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 4.0e-112 410.6 1401 28.9
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 5.5e-109 400.2 1608 26.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 6.7e-107 393.3 1352 28.1
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 7.4e-106 389.8 1253 28.9
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 8.2e-105 386.3 1384 27.3
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 1.4e-104 385.6 1222 29.2
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 1.8e-104 385.2 1351 27.9
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 3.1e-104 384.4 1350 27.6
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.5e-103 382.1 1406 26.8
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 3.4e-103 380.9 1387 27.9
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 4.5e-103 380.6 1335 26.9
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 5.0e-102 377.1 1295 28.6
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.9e-101 375.2 1337 27.4
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.9e-101 375.2 1337 27.5
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 2.5e-101 374.8 1343 27.3
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 5.5e-101 373.6 1325 27.2
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 5.5e-101 373.6 1325 27.2
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 7.2e-101 373.2 1349 26.8
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 7.9e-100 369.8 1349 27.3
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 1.0e-99 369.4 1281 27.1
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 3.0e-99 367.9 1284 27.3
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 1.1e-98 365.9 1407 27.7
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 2.5e-98 364.8 1236 27.3
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 2.5e-98 364.8 1306 28.3
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 3.3e-98 364.4 1248 26.3
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 9.7e-98 362.8 1349 27.1
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 9.7e-98 362.8 1226 26.8
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 1.7e-97 362.1 1345 27.2
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.2e-97 361.7 1337 25.6
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 2.2e-97 361.7 1242 27.9
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 6.3e-97 360.1 1281 27.2
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 6.3e-97 360.1 1284 27.1
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.4e-96 359.0 1326 26.9
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 9.1e-96 356.3 1540 26.2
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 9.1e-96 356.3 1268 27.4
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 3.4e-95 354.4 1204 28.6
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 1.0e-94 352.8 1248 27.0
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.9e-94 351.3 1347 27.2
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.9e-93 348.6 1482 25.4
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 2.5e-93 348.2 1332 26.5
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 5.5e-93 347.1 1229 26.7
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 7.2e-93 346.7 1344 26.6
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 7.2e-93 346.7 1201 26.9
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.6e-92 344.4 1372 26.3
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 1.8e-91 342.0 1233 26.5
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 6.7e-91 340.1 1230 26.7
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 6.7e-91 340.1 1233 27.2
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 8.8e-91 339.7 1267 26.0
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 3.3e-90 337.8 1188 26.9
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 3.3e-90 337.8 1169 26.4
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 7.4e-90 336.7 1270 26.9
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 9.7e-90 336.3 1252 26.6
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.2e-89 335.1 1368 26.7
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 4.8e-89 334.0 1228 26.3
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 7.7e-87 326.6 1425 25.7
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 8.5e-86 323.2 1176 25.9
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 3.2e-85 321.2 1222 26.4
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 4.2e-85 320.9 1220 26.4
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 6.7e-83 313.5 1217 27.2
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 4.4e-82 310.8 1223 26.2
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 9.7e-82 309.7 1321 25.8
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 1.1e-80 306.2 1214 25.9
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.8e-78 297.7 348 44.5
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 9.4e-77 293.1 1222 25.8
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 4.0e-75 287.7 1350 24.9
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 8.8e-75 286.6 413 38.5
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 8.8e-75 286.6 1198 25.2
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 5.7e-74 283.9 1223 25.8
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 9.1e-72 276.6 1170 24.6
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 1.2e-71 276.2 997 27.1
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 5.0e-70 270.8 443 35.2
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.5e-69 269.2 1237 24.3
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 4.2e-69 267.7 1250 25.3
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.4e-67 262.7 1051 26.6
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 2.3e-67 261.9 1326 25.3
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 4.0e-67 261.2 1177 25.1
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 4.4e-66 257.7 421 35.2
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.3e-62 245.4 386 36.0
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 2.5e-61 241.9 411 34.5
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.2e-60 239.6 285 44.2
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 4.7e-60 237.7 1441 23.5
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 6.1e-60 237.3 411 34.1
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 3.7e-57 228.0 403 33.0
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.5e-55 221.1 690 28.0
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 4.3e-53 214.5 1065 24.4
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 2.9e-49 201.8 274 39.1
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 6.4e-49 200.7 417 30.2
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 5.6e-45 187.6 405 31.4
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 8.0e-44 183.7 781 26.4
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 1.3e-41 176.4 1191 23.7
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 6.6e-38 164.1 177 48.6
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.6e-36 158.3 442 31.9
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.1e-36 157.1 183 40.4
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.1e-36 157.1 183 40.4
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.4e-35 156.4 138 56.5
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 5.2e-35 154.5 138 55.8
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 3.2e-32 145.2 542 27.7
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 5.4e-32 144.4 177 45.2
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.3e-30 139.8 1146 22.8
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 6.6e-30 137.5 135 46.7
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.8e-27 129.4 169 43.2
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 6.8e-27 127.5 185 41.1
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.8e-25 121.7 122 50.8
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.4e-24 119.0 203 36.0
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 5.4e-24 117.9 107 52.3
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.2e-23 116.7 114 52.6
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.2e-23 116.7 83 61.4
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.4e-19 103.2 177 33.9
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.0e-19 101.7 87 58.6
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 9.3e-16 90.5 173 29.5
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.9e-14 85.1 76 52.6
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 6.6e-14 84.3 82 53.7
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 1.1e-11 77.0 82 50.0
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 1.4e-11 76.6 125 32.8
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.6e-07 61.6 57 47.4
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-06 60.1 57 47.4
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.3e-06 59.3 57 45.6
CBR_g26527 Chara braunii HOM05D001007 ORTHO05D008005 3.9e-06 58.5 161 28.6


User provided reference genes

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