Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 3.1e-63 245.0 124 100.0
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.4e-55 219.5 130 87.7
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.7e-45 186.0 111 83.8
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 3.5e-22 108.6 110 56.4
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.8e-21 105.1 108 54.6
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.1e-19 99.4 109 55.0
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 3.6e-19 98.6 111 54.1
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.1e-19 97.8 109 56.0
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.0e-18 97.1 130 48.5
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.0e-18 97.1 110 52.7
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.4e-18 96.7 110 52.7
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.4e-18 96.7 128 52.3
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.4e-18 96.7 109 51.4
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 2.3e-18 95.9 130 50.8
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.3e-18 95.9 111 54.1
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 3.0e-18 95.5 109 53.2
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.0e-17 92.8 117 47.9
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.6e-17 92.4 104 52.9
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 2.6e-17 92.4 111 54.1
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.6e-17 92.4 111 54.1
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.4e-17 92.0 128 46.9
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 3.4e-17 92.0 84 60.7
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 4.4e-17 91.7 111 51.4
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.7e-17 91.3 119 47.9
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 7.5e-17 90.9 111 50.5
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 7.5e-17 90.9 125 48.0
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 7.5e-17 90.9 109 50.5
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.5e-17 90.9 110 51.8
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 9.8e-17 90.5 122 47.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.8e-17 90.5 110 51.8
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.3e-16 90.1 107 55.1
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.3e-16 90.1 84 58.3
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.3e-16 90.1 84 58.3
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.7e-16 89.7 111 52.3
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.2e-16 89.4 124 48.4
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.8e-16 89.0 86 57.0
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.8e-16 89.0 110 48.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.8e-16 89.0 84 60.7
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 6.3e-16 87.8 113 49.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 6.3e-16 87.8 113 49.6
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 6.3e-16 87.8 123 47.2
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.3e-16 87.4 113 48.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.1e-15 87.0 80 60.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.1e-15 87.0 103 47.6
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.4e-15 86.7 109 49.5
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.4e-15 86.7 110 49.1
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-15 86.3 130 43.1
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-15 86.3 129 42.6
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.8e-15 86.3 130 43.1
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.8e-15 86.3 86 58.1
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.8e-15 86.3 83 56.6
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.4e-15 85.9 110 49.1
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.4e-15 85.9 101 48.5
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.4e-15 85.9 110 49.1
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.4e-15 85.9 132 43.9
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 3.1e-15 85.5 113 47.8
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.1e-15 85.5 110 46.4
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.1e-15 85.1 79 59.5
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 7.0e-15 84.3 110 50.9
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 7.0e-15 84.3 113 48.7
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 9.1e-15 84.0 110 45.5
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 9.1e-15 84.0 101 49.5
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 9.1e-15 84.0 94 50.0
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 9.1e-15 84.0 94 50.0
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.2e-14 83.6 91 52.7
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.2e-14 83.6 110 47.3
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.6e-14 83.2 130 42.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-14 83.2 131 43.5
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-14 83.2 134 43.3
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.6e-14 83.2 82 57.3
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.6e-14 83.2 112 45.5
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.0e-14 82.8 132 42.4
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 2.0e-14 82.8 115 46.1
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.7e-14 82.4 127 43.3
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 2.7e-14 82.4 107 46.7
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.5e-14 82.0 107 49.5
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 4.5e-14 81.6 134 42.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 4.5e-14 81.6 134 42.5
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 4.5e-14 81.6 128 43.0
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 5.9e-14 81.3 107 50.5
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 5.9e-14 81.3 126 46.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 7.7e-14 80.9 109 50.5
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 7.7e-14 80.9 112 46.4
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.0e-13 80.5 100 48.0
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.0e-13 80.5 111 46.8
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-13 79.7 132 41.7
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.7e-13 79.7 81 54.3
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.2e-13 79.3 109 45.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.2e-13 79.3 109 46.8
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 2.9e-13 79.0 109 49.5
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 3.8e-13 78.6 103 48.5
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 3.8e-13 78.6 101 50.5
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 5.0e-13 78.2 97 49.5
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 5.0e-13 78.2 107 45.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 6.5e-13 77.8 100 49.0
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 6.5e-13 77.8 135 40.7
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 8.5e-13 77.4 132 40.9
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.1e-12 77.0 103 49.5
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.1e-12 77.0 87 51.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.9e-12 76.3 83 50.6
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.9e-12 76.3 84 50.0
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.9e-12 76.3 127 42.5
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.5e-12 75.9 110 45.5
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 3.2e-12 75.5 114 43.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.2e-12 75.1 87 51.7
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.5e-12 74.7 82 53.7
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 9.4e-12 73.9 134 44.0
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.2e-11 73.6 132 38.6
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.6e-11 73.2 82 50.0
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.7e-11 72.4 98 46.9
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.6e-11 72.0 114 42.1
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.6e-11 72.0 105 40.0
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 4.7e-11 71.6 114 44.7
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.7e-11 71.6 81 51.9
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.7e-11 71.6 81 51.9
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.0e-10 68.9 99 42.4
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.0e-10 68.6 133 38.3
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 4.0e-10 68.6 96 43.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 4.0e-10 68.6 96 42.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.0e-10 68.6 96 42.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 5.2e-10 68.2 81 42.0
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.2e-10 68.2 95 42.1
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 8.8e-10 67.4 114 40.4
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-09 67.0 80 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.5e-09 66.6 79 48.1
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.5e-09 66.6 125 43.2
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 3.4e-09 65.5 112 42.0
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 4.4e-09 65.1 111 40.5
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.7e-08 63.2 78 48.7
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 8.3e-08 60.8 107 42.1
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.8e-07 59.7 77 49.4
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.4e-07 59.3 101 43.6
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.7e-06 55.8 103 38.8
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.5e-06 55.5 78 44.9
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 7.7e-06 54.3 67 47.8


User provided reference genes

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