Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.6e-118 429.5 217 100.0
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 3.4e-97 358.6 212 84.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 6.8e-82 307.8 204 71.6
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.3e-80 303.5 203 70.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.7e-80 303.1 204 69.6
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.7e-80 303.1 205 69.8
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.9e-80 302.4 201 73.6
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 8.3e-80 300.8 201 72.1
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.1e-79 300.4 201 70.6
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 7.0e-79 297.7 202 68.8
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.6e-78 296.6 201 69.7
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 2.7e-78 295.8 200 71.0
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 2.7e-78 295.8 204 67.2
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 4.6e-78 295.0 204 68.6
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 6.0e-78 294.7 201 69.7
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.0e-77 293.9 204 67.2
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 3.0e-77 292.4 201 70.1
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 3.0e-77 292.4 204 68.1
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 3.0e-77 292.4 204 66.7
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 3.9e-77 292.0 204 66.7
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 3.9e-77 292.0 204 66.2
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 5.0e-77 291.6 201 70.1
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 5.0e-77 291.6 204 68.1
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 5.0e-77 291.6 204 69.6
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 5.0e-77 291.6 204 69.6
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 5.0e-77 291.6 204 70.1
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 8.6e-77 290.8 205 68.3
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.1e-76 290.4 201 69.2
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.5e-76 290.0 200 70.5
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 2.5e-76 289.3 204 68.1
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 4.3e-76 288.5 201 68.7
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 5.6e-76 288.1 205 66.8
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.3e-76 287.7 203 67.5
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.3e-76 287.7 203 67.5
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 9.5e-76 287.3 201 68.2
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 9.5e-76 287.3 204 67.6
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 9.5e-76 287.3 205 65.9
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.2e-75 287.0 203 67.5
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.2e-75 287.0 206 66.5
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.2e-75 287.0 201 67.2
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.6e-75 286.6 201 68.7
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.1e-75 286.2 201 68.2
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 2.1e-75 286.2 201 68.7
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.8e-75 285.8 201 67.7
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.8e-75 285.8 201 68.2
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 3.6e-75 285.4 200 67.5
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 4.7e-75 285.0 205 66.3
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 6.2e-75 284.6 201 69.7
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 6.2e-75 284.6 204 68.6
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 3.1e-74 282.3 202 66.3
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.0e-73 279.6 204 67.2
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 3.4e-73 278.9 203 65.0
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 7.5e-73 277.7 201 65.7
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.5e-73 277.7 201 66.7
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.5e-73 277.7 201 66.7
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 7.5e-73 277.7 203 66.0
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.8e-73 277.3 204 66.7
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.2e-72 276.2 201 63.7
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 3.7e-72 275.4 203 64.0
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 6.4e-72 274.6 204 64.2
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 6.4e-72 274.6 201 66.2
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.3e-72 274.2 202 63.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.9e-71 273.1 201 66.2
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 5.4e-71 271.6 203 64.5
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 5.4e-71 271.6 201 65.7
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 7.1e-71 271.2 235 58.7
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 9.2e-71 270.8 206 62.6
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.6e-70 270.0 203 66.0
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 2.1e-70 269.6 201 65.2
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.7e-70 269.2 201 66.7
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 3.5e-70 268.9 199 66.8
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 3.5e-70 268.9 201 64.7
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 6.0e-70 268.1 203 64.5
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.0e-69 267.3 242 56.6
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.3e-69 266.9 204 63.2
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 3.9e-69 265.4 204 63.2
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 8.6e-69 264.2 205 64.4
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 7.3e-68 261.2 201 64.7
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.2e-67 260.4 201 65.2
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 5.2e-66 255.0 204 61.8
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.6e-65 252.7 199 64.3
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.9e-64 249.2 203 62.6
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.4e-64 247.7 181 64.6
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 7.1e-63 244.6 196 61.2
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.1e-63 244.6 185 64.9
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 7.8e-62 241.1 203 58.1
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 1.3e-61 240.4 201 58.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 3.9e-61 238.8 203 58.1
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.8e-59 232.6 205 57.1
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.4e-57 225.3 204 53.4
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 5.4e-55 218.4 211 55.5
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 7.1e-55 218.0 215 54.9
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 3.0e-53 212.6 203 49.8
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.0e-53 212.6 213 50.2
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 6.6e-53 211.5 148 70.9
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.6e-51 206.8 208 48.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.2e-49 200.7 314 39.5
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.5e-49 200.3 202 48.5
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 9.9e-49 197.6 205 48.3
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.9e-47 193.4 207 49.8
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.4e-47 193.0 213 45.5
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.8e-45 186.8 148 62.8
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.1e-43 179.9 204 44.6
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.0e-42 174.5 204 45.1
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.7e-40 170.2 203 47.3
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 6.4e-40 168.3 184 53.8
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.5e-36 157.1 103 68.9
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 6.9e-34 148.3 95 73.7
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 9.0e-34 147.9 102 65.7
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 9.0e-34 147.9 97 68.0
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 5.8e-33 145.2 120 62.5
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.8e-33 145.2 103 67.0
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 3.7e-27 125.9 98 58.2
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.9e-24 116.3 84 63.1
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 2.5e-23 113.2 206 33.5
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.5e-23 113.2 128 51.6
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 4.2e-23 112.5 91 60.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 5.1e-21 105.5 93 54.8
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.3e-18 95.5 84 57.1
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.9e-18 95.1 83 57.8
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 2.5e-15 86.7 46 82.6
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.2e-14 84.3 203 31.0
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.9e-14 81.6 93 48.4
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 5.1e-13 79.0 49 69.4


User provided reference genes

Program Settings