Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 4.1e-142 508.1 259 100.0
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 6.8e-137 490.7 259 96.9
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.3e-121 439.1 262 88.2
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.3e-121 439.1 262 88.2
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.2e-101 373.6 257 74.7
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.0e-100 370.5 258 72.9
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 6.6e-100 367.9 257 73.2
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.3e-99 365.2 259 72.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 5.6e-99 364.8 257 72.8
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 9.5e-99 364.0 257 73.5
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 9.5e-99 364.0 257 72.4
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.2e-98 363.6 257 72.8
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.6e-98 363.2 257 73.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.1e-98 362.8 256 73.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.8e-98 362.5 257 72.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.8e-98 362.5 257 74.3
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.8e-98 362.5 259 72.6
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 8.1e-98 360.9 256 72.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-97 360.5 257 72.0
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.1e-97 360.5 257 73.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.4e-97 360.1 256 71.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.8e-97 359.8 257 71.2
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 3.1e-97 359.0 257 73.5
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 3.1e-97 359.0 257 71.6
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 3.1e-97 359.0 257 73.2
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.8e-97 357.8 257 73.2
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.8e-97 357.8 257 70.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 8.9e-97 357.5 257 71.6
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 8.9e-97 357.5 257 71.6
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 70.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 72.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 70.8
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 71.6
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 71.6
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 71.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.0e-96 356.3 257 71.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.6e-96 355.9 257 70.8
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.4e-96 355.5 257 71.6
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 3.4e-96 355.5 256 71.5
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 5.8e-96 354.8 257 72.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 5.8e-96 354.8 257 70.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 5.8e-96 354.8 257 72.0
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.6e-96 354.4 257 71.6
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 9.9e-96 354.0 257 71.2
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.7e-95 353.2 258 71.7
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.2e-95 352.8 258 71.3
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 2.9e-95 352.4 259 69.9
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.9e-95 352.4 256 71.9
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.8e-95 352.1 257 73.2
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.8e-95 352.1 258 71.3
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 3.8e-95 352.1 257 71.2
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.8e-95 352.1 257 72.4
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.8e-95 352.1 253 71.5
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 4.9e-95 351.7 257 70.0
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.9e-95 351.7 257 71.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 6.4e-95 351.3 259 71.4
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.4e-95 350.9 258 70.5
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.1e-94 350.5 258 70.2
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.4e-94 350.1 258 71.7
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.4e-94 350.1 256 69.5
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.9e-94 349.7 257 70.8
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.9e-94 349.7 257 72.4
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.2e-94 348.6 252 71.8
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 9.2e-94 347.4 262 67.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-93 346.7 264 69.7
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.6e-93 346.7 265 70.9
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.6e-93 346.7 258 70.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.6e-93 345.1 259 71.0
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 6.0e-93 344.7 257 70.0
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.0e-93 344.7 255 68.2
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.0e-92 344.0 258 71.7
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.0e-92 344.0 257 70.0
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.7e-92 343.2 257 68.5
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.7e-92 343.2 256 69.9
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.3e-92 342.8 256 69.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.0e-92 342.4 257 70.0
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 8.7e-92 340.9 251 70.9
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 8.7e-92 340.9 259 70.3
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.9e-91 339.7 260 69.2
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.3e-91 339.0 252 70.6
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 4.3e-91 338.6 257 70.0
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 4.3e-91 338.6 258 70.2
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 5.6e-91 338.2 258 70.2
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 7.3e-91 337.8 258 69.4
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 9.6e-91 337.4 281 65.8
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.8e-90 335.9 261 67.4
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.6e-90 335.5 257 68.5
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 3.6e-90 335.5 257 67.7
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 8.1e-90 334.3 256 68.4
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.1e-89 334.0 257 68.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.4e-89 333.6 256 69.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.8e-89 333.2 257 69.3
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.4e-89 332.8 256 68.8
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.0e-89 332.0 256 68.8
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 4.0e-89 332.0 298 60.7
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 5.3e-89 331.6 257 66.9
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 5.3e-89 331.6 257 68.9
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 5.3e-89 331.6 252 70.2
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 6.9e-89 331.3 258 68.2
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.2e-88 330.5 272 66.2
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-88 330.5 256 67.2
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-88 330.1 252 67.5
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.0e-88 329.7 257 68.5
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 5.8e-88 328.2 259 68.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 5.8e-88 328.2 256 67.6
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 7.6e-88 327.8 257 67.7
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 9.9e-88 327.4 256 66.8
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.2e-87 326.2 249 67.5
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.8e-87 325.5 253 68.4
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 5.4e-86 321.6 257 66.1
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 7.1e-86 321.2 256 65.2
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 9.3e-86 320.9 284 62.0
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.2e-85 320.5 258 65.9
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.1e-85 319.7 256 66.4
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.3e-84 317.0 256 66.4
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.0e-84 315.8 256 65.2
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 5.1e-84 315.1 257 66.9
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.1e-83 313.9 257 66.9
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.1e-83 313.9 257 66.9
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.1e-83 313.9 257 65.8
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.5e-83 313.5 256 65.6
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.9e-83 313.2 257 66.1
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.9e-83 313.2 257 66.1
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.9e-83 313.2 228 70.6
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.3e-83 312.4 256 66.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 7.3e-83 311.2 257 66.1
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.1e-82 309.7 310 57.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.1e-82 309.7 257 63.4
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.8e-82 308.5 257 64.2
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 8.1e-82 307.8 256 65.2
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.1e-81 307.4 275 62.9
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 5.3e-81 305.1 255 64.7
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.3e-79 300.4 229 69.9
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 8.4e-79 297.7 238 64.3
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.2e-78 295.8 257 62.6
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 9.3e-78 294.3 256 61.3
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.2e-77 293.9 238 66.0
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.6e-77 292.0 256 62.9
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 7.9e-77 291.2 265 61.5
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 7.4e-75 284.6 207 71.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 8.1e-74 281.2 258 59.7
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 5.3e-73 278.5 196 69.9
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.3e-73 278.5 243 64.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 2.6e-72 276.2 258 59.7
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 3.8e-71 272.3 259 59.5
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 3.5e-69 265.8 259 59.5
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.8e-68 263.5 256 57.8
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 5.1e-68 261.9 255 58.4
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 3.3e-67 259.2 197 68.5
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 7.4e-67 258.1 193 69.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.6e-61 238.8 144 81.2
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.7e-47 193.7 165 62.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 3.9e-44 182.6 237 45.1
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.4e-41 173.3 260 41.2
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.5e-40 170.6 150 58.0
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.7e-36 155.2 233 41.2
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-32 142.5 248 39.1
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.0e-28 131.3 93 69.9
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.7e-27 124.8 74 86.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 9.7e-27 124.8 89 69.7
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 5.0e-23 112.5 109 61.5
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 9.4e-22 108.2 167 45.5
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 4.0e-20 102.8 113 53.1
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 5.4e-17 92.4 181 36.5
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.1e-09 68.2 139 36.0
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 5.4e-09 65.9 51 60.8
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.4e-09 65.9 40 75.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.2e-08 64.7 40 75.0
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 4.5e-08 62.8 65 55.4
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 2.3e-07 60.5 86 37.2
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 5.0e-07 59.3 115 40.9
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.3e-06 55.5 60 48.3


User provided reference genes

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