Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 3.4e-100 368.2 173 100.0
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 2.2e-83 312.4 153 94.8
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 1.3e-80 303.1 148 94.6
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 1.3e-72 276.6 148 87.2
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 1.3e-67 260.0 148 78.4
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 3.3e-63 245.4 119 95.8
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 5.9e-36 154.8 158 45.6
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 1.4e-34 150.2 152 47.4
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 2.5e-34 149.4 155 46.5
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 3.2e-34 149.1 155 47.7
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 5.5e-34 148.3 154 45.5
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 7.2e-34 147.9 155 47.1
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 2.1e-33 146.4 155 47.7
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 2.7e-33 146.0 155 47.7
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 4.7e-33 145.2 155 43.9
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 3.0e-32 142.5 151 45.7
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 5.1e-32 141.7 154 44.2
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 8.8e-32 141.0 156 45.5
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 8.8e-32 141.0 156 44.9
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 1.1e-31 140.6 156 44.2
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 1.5e-31 140.2 153 45.1
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 2.6e-31 139.4 156 44.2
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 2.6e-31 139.4 156 48.7
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 3.3e-31 139.0 152 44.7
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 4.4e-31 138.7 153 46.4
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 5.7e-31 138.3 148 45.9
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 5.7e-31 138.3 156 41.7
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 5.7e-31 138.3 156 41.7
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 7.4e-31 137.9 153 45.8
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 9.7e-31 137.5 154 47.4
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 1.3e-30 137.1 153 43.8
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 1.3e-30 137.1 151 45.0
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.3e-30 137.1 153 45.8
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.2e-30 136.3 153 44.4
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 2.8e-30 136.0 155 43.2
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 3.7e-30 135.6 150 43.3
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 4.8e-30 135.2 150 45.3
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 6.3e-30 134.8 148 43.9
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 6.3e-30 134.8 151 44.4
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.1e-29 134.0 149 46.3
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 1.1e-29 134.0 156 44.2
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 1.4e-29 133.7 153 43.1
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 3.1e-29 132.5 160 41.2
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 3.1e-29 132.5 180 41.7
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 4.1e-29 132.1 156 41.0
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 4.1e-29 132.1 152 43.4
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 4.1e-29 132.1 154 41.6
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 7.0e-29 131.3 148 43.2
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 1.5e-28 130.2 156 44.2
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 2.0e-28 129.8 150 42.0
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 2.0e-28 129.8 155 43.2
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 2.0e-28 129.8 158 43.7
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 2.0e-28 129.8 152 41.4
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.6e-28 129.4 157 43.9
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.6e-28 129.4 152 42.1
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.5e-28 129.0 152 41.4
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 4.5e-28 128.6 149 45.0
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 4.5e-28 128.6 153 43.8
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 5.9e-28 128.3 150 42.7
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 5.9e-28 128.3 152 44.7
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 5.9e-28 128.3 157 41.4
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.0e-27 127.5 156 41.7
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.0e-27 127.5 152 44.1
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 1.3e-27 127.1 156 44.2
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 2.9e-27 125.9 156 42.9
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 3.8e-27 125.6 156 40.4
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 3.8e-27 125.6 152 44.1
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 6.5e-27 124.8 150 41.3
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 1.5e-26 123.6 157 42.0
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 1.5e-26 123.6 152 42.8
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 1.9e-26 123.2 148 41.9
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 1.9e-26 123.2 156 42.3
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 2.5e-26 122.9 156 41.7
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 3.2e-26 122.5 156 42.3
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 4.2e-26 122.1 154 40.3
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.0e-24 117.5 149 41.6
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 1.4e-24 117.1 156 39.1
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.4e-24 117.1 152 41.4
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 1.4e-24 117.1 90 58.9
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.8e-24 116.7 167 41.9
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 1.8e-24 116.7 153 41.2
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 2.3e-24 116.3 156 38.5
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.3e-24 116.3 158 39.9
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 2.3e-24 116.3 153 40.5
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 2.3e-24 116.3 156 39.1
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 3.0e-24 115.9 154 39.0
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 4.0e-24 115.5 148 41.2
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 5.2e-24 115.2 148 41.9
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 6.7e-24 114.8 152 43.4
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 6.7e-24 114.8 156 39.7
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 8.8e-24 114.4 142 45.8
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 8.8e-24 114.4 154 39.0
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 1.1e-23 114.0 118 44.9
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 2.6e-23 112.8 157 36.9
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 2.6e-23 112.8 154 40.3
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 4.4e-23 112.1 118 48.3
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 4.4e-23 112.1 152 41.4
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 2.2e-22 109.8 154 38.3
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 4.8e-22 108.6 148 39.2
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 6.3e-22 108.2 151 39.1
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 1.1e-21 107.5 152 38.2
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 2.4e-21 106.3 115 46.1
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 3.1e-21 105.9 159 36.5
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 5.3e-21 105.1 151 37.1
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 9.1e-21 104.4 121 43.0
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 1.2e-20 104.0 156 38.5
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.7e-19 100.1 75 58.7
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 2.9e-19 99.4 169 38.5
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 1.5e-18 97.1 116 42.2
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 2.5e-18 96.3 156 35.9
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 3.2e-18 95.9 136 41.2
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 4.2e-18 95.5 95 46.3
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 5.5e-18 95.1 104 47.1
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 2.7e-17 92.8 114 39.5
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 8.0e-17 91.3 62 61.3
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.3e-16 89.7 148 35.8
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 2.3e-16 89.7 72 52.8
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 4.0e-16 89.0 167 31.1
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 3.4e-15 85.9 150 32.7
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 2.2e-14 83.2 185 30.3
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 8.3e-14 81.3 159 32.1
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 2.4e-13 79.7 95 44.2
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 3.1e-13 79.3 60 58.3
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 5.4e-13 78.6 170 30.6
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 1.2e-12 77.4 53 64.2
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 7.7e-12 74.7 126 32.5
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 2.9e-11 72.8 143 35.7
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 2.5e-10 69.7 114 32.5
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 5.5e-10 68.6 116 35.3
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 5.5e-10 68.6 117 33.3
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 8.0e-09 64.7 40 62.5
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 4.0e-08 62.4 58 48.3
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 4.0e-08 62.4 77 39.0
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 2.6e-07 59.7 70 42.9
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 3.4e-07 59.3 62 45.2
Zm00001eb200250 Zea mays HOM05D005189 ORTHO05D442319 1.7e-06 57.0 31 90.3
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 4.9e-06 55.5 31 87.1
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 8.3e-06 54.7 31 87.1


User provided reference genes

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