Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb092030 Zea mays HOM05D003317 ORTHO05D003696 4.9e-60 234.2 112 100.0
Zm00001eb402190 Zea mays HOM05D003317 ORTHO05D003696 3.8e-52 208.0 110 92.7
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 1.3e-47 193.0 101 95.0
Zm00001eb177300 Zea mays HOM05D003317 ORTHO05D003696 3.3e-40 168.3 101 81.2
Zm00001eb042910 Zea mays HOM05D003317 ORTHO05D003696 3.6e-34 148.3 82 91.5
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 1.8e-33 146.0 102 72.5
Sabra06G0170300 Salix brachista HOM05D003317 ORTHO05D003696 4.8e-23 111.3 107 51.4
Migut.L01559 Erythranthe guttata HOM05D003317 ORTHO05D003696 1.6e-21 106.3 102 49.0
Oeu063419.1 Olea europaea HOM05D003317 ORTHO05D003696 4.5e-21 104.8 102 49.0
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 5.9e-21 104.4 102 52.9
Potri.006G220600 Populus trichocarpa HOM05D003317 ORTHO05D003696 3.8e-20 101.7 100 51.0
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 5.0e-20 101.3 102 50.0
TWI34G1197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 5.0e-20 101.3 110 50.9
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 8.5e-20 100.5 102 48.0
FAN19G2419 Fragaria x ananassa HOM05D003317 ORTHO05D003696 8.5e-20 100.5 102 49.0
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 8.5e-20 100.5 102 49.0
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 1.5e-19 99.8 102 48.0
Glyma.15G177400 Glycine max HOM05D003317 ORTHO05D003696 1.9e-19 99.4 100 50.0
Gohir.A07G019500 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.9e-19 99.4 102 48.0
Gorai.001G020000 Gossypium raimondii HOM05D003317 ORTHO05D003696 1.9e-19 99.4 102 48.0
Gohir.D07G019300 Gossypium hirsutum HOM05D003317 ORTHO05D003696 2.5e-19 99.0 102 48.0
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 2.5e-19 99.0 102 51.0
FAN23G1713 Fragaria x ananassa HOM05D003317 ORTHO05D003696 3.2e-19 98.6 102 48.0
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 3.2e-19 98.6 102 50.0
VMungo1309G0541 Vigna mungo HOM05D003317 ORTHO05D003696 3.2e-19 98.6 100 50.0
COL.COLO4_21141 Corchorus olitorius HOM05D003317 ORTHO05D003696 4.2e-19 98.2 102 45.1
FvH4_1g08600 Fragaria vesca HOM05D003317 ORTHO05D003696 4.2e-19 98.2 102 48.0
Phvul.009G227500 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 5.5e-19 97.8 100 49.0
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 9.4e-19 97.1 102 45.1
Eucgr.C00817 Eucalyptus grandis HOM05D003317 ORTHO05D003696 9.4e-19 97.1 102 50.0
HPP92_004371 Vanilla planifolia HOM05D003317 ORTHO05D003696 1.2e-18 96.7 102 50.0
Sopen00g008950 Solanum pennellii HOM05D003317 ORTHO05D003696 2.1e-18 95.9 102 46.1
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 2.1e-18 95.9 102 46.1
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 2.7e-18 95.5 102 50.0
SGA_v2.0_scaffold21G09482 Striga asiatica HOM05D003317 ORTHO05D003696 2.7e-18 95.5 102 48.0
Cpa.g.sc126.22 Carica papaya HOM05D003317 ORTHO05D003696 3.6e-18 95.1 100 46.0
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 3.6e-18 95.1 102 48.0
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 3.6e-18 95.1 102 46.1
Glyma.17G049600 Glycine max HOM05D003317 ORTHO05D003696 4.7e-18 94.7 100 48.0
Lalb_Chr07g0181161 Lupinus albus HOM05D003317 ORTHO05D003696 4.7e-18 94.7 100 47.0
Lj6g0021845 Lotus japonicus HOM05D003317 ORTHO05D003696 8.0e-18 94.0 100 48.0
QL11p000685 Quercus lobata HOM05D003317 ORTHO05D003696 8.0e-18 94.0 102 46.1
Lsat_1_v5_gn_7_35060 Lactuca sativa HOM05D003317 ORTHO05D003696 1.0e-17 93.6 100 48.0
CAN.G498.3 Capsicum annuum HOM05D003317 ORTHO05D003696 1.4e-17 93.2 102 46.1
CAN.G63.8 Capsicum annuum HOM05D003317 ORTHO05D003696 1.4e-17 93.2 102 46.1
TWI32G0197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 1.4e-17 93.2 102 46.1
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 2.3e-17 92.4 102 45.1
SalBow4G1263 Salvia bowleyana HOM05D003317 ORTHO05D003696 4.0e-17 91.7 102 48.0
VMungo1215G0865 Vigna mungo HOM05D003317 ORTHO05D003696 8.8e-17 90.5 100 45.0
Medtr2g041610 Medicago truncatula HOM05D003317 ORTHO05D003696 1.5e-16 89.7 100 46.0
Phvul.003G131200 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 2.0e-16 89.4 100 45.0
Peaxi162Scf00127g00131 Petunia axillaris HOM05D003317 ORTHO05D003696 2.6e-16 89.0 102 43.1
TPR.G28585 Trifolium pratense HOM05D003317 ORTHO05D003696 2.6e-16 89.0 100 45.0
Glyma.13G110100 Glycine max HOM05D003317 ORTHO05D003696 3.3e-16 88.6 100 47.0
Lalb_Chr23g0276391 Lupinus albus HOM05D003317 ORTHO05D003696 3.3e-16 88.6 100 47.0
Cfa002996 Carpinus fangiana HOM05D003317 ORTHO05D003696 4.4e-16 88.2 102 41.2
Haze_26007 Corylus avellana HOM05D003317 ORTHO05D003696 7.5e-16 87.4 102 44.1
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 9.7e-16 87.0 102 43.1
CANSAT56G0327 Cannabis sativa HOM05D003317 ORTHO05D003696 1.3e-15 86.7 102 41.2
TAR626G1452 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.3e-15 86.7 102 47.1
TAR626G1699 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.3e-15 86.7 102 47.1
Psat1g134160 Pisum sativum HOM05D003317 ORTHO05D003696 1.7e-15 86.3 100 43.0
Duzib168G1355 Durio zibethinus HOM05D003317 ORTHO05D003696 4.8e-15 84.7 102 44.1
MSTRG.25987 Avicennia marina HOM05D003317 ORTHO05D003696 6.3e-15 84.3 102 41.2
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 6.3e-15 84.3 102 43.1
Sed0023098 Sechium edule HOM05D003317 ORTHO05D003696 6.3e-15 84.3 98 43.9
Dinv41844 Davidia involucrata HOM05D003317 ORTHO05D003696 4.1e-14 81.6 71 52.1
Nn6g35618 Nelumbo nucifera HOM05D003317 ORTHO05D003696 4.1e-14 81.6 102 43.1
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 5.3e-14 81.3 102 40.2
Potri.006G142200 Populus trichocarpa HOM05D003317 ORTHO05D003696 5.3e-14 81.3 74 50.0
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 1.2e-13 80.1 102 43.1
HanXRQChr09g0237821 Helianthus annuus HOM05D003317 ORTHO05D003696 1.2e-13 80.1 100 39.0
Sabra06G0111300 Salix brachista HOM05D003317 ORTHO05D003696 1.6e-13 79.7 102 42.2
RcHm_v2.0_Chr2g0094821 Rosa chinensis HOM05D003317 ORTHO05D003696 2.0e-13 79.3 76 48.7
ATR0598G291 Amborella trichopoda HOM05D003317 ORTHO05D003696 2.7e-13 79.0 102 46.1
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 3.5e-13 78.6 134 35.8
SHI33751 Sapria himalayana HOM05D003317 ORTHO05D003696 3.5e-13 78.6 100 43.0
MD02G1090200 Malus domestica HOM05D003317 ORTHO05D003696 4.5e-13 78.2 106 36.8
Nitab4.5_0000446g0150 Nicotiana tabacum HOM05D003317 ORTHO05D003696 4.5e-13 78.2 110 38.2
CSS0017754 Camellia sinensis var. sinensis HOM05D003317 ORTHO05D003696 5.9e-13 77.8 71 50.7
Ciclev10007604m.g Citrus clementina HOM05D003317 ORTHO05D003696 5.9e-13 77.8 74 48.6
Sed0002159 Sechium edule HOM05D003317 ORTHO05D003696 5.9e-13 77.8 98 37.8
arahy.Tifrunner.gnm1.ann1.7WMI9V Arachis hypogaea HOM05D003317 ORTHO05D003696 2.2e-12 75.9 72 47.2
Dinv42387 Davidia involucrata HOM05D003317 ORTHO05D003696 2.2e-12 75.9 69 47.8
Manes.16G095800 Manihot esculenta HOM05D003317 ORTHO05D003696 2.2e-12 75.9 74 48.6
vmacro06337 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 2.2e-12 75.9 99 38.4
arahy.Tifrunner.gnm1.ann1.C19Y0U Arachis hypogaea HOM05D003317 ORTHO05D003696 3.8e-12 75.1 72 47.2
COL.COLO4_18104 Corchorus olitorius HOM05D003317 ORTHO05D003696 5.0e-12 74.7 73 47.9
Duzib168G0118 Durio zibethinus HOM05D003317 ORTHO05D003696 5.0e-12 74.7 75 45.3
Sopen08g017120 Solanum pennellii HOM05D003317 ORTHO05D003696 5.0e-12 74.7 103 40.8
CiPaw.03G207100 Carya illinoinensis HOM05D003317 ORTHO05D003696 8.5e-12 73.9 74 45.9
Lj7A686T70 Lonicera japonica HOM05D003317 ORTHO05D003696 8.5e-12 73.9 67 50.7
Peaxi162Scf00486g01021 Petunia axillaris HOM05D003317 ORTHO05D003696 8.5e-12 73.9 66 53.0
PSO135G1032 Papaver somniferum HOM05D003317 ORTHO05D003696 1.1e-11 73.6 74 50.0
arahy.Tifrunner.gnm1.ann1.MFQ8D7 Arachis hypogaea HOM05D003317 ORTHO05D003696 1.5e-11 73.2 75 42.7
Gorai.010G087700 Gossypium raimondii HOM05D003317 ORTHO05D003696 1.9e-11 72.8 75 41.3
Rhsim03G0227900 Rhododendron simsii HOM05D003317 ORTHO05D003696 1.9e-11 72.8 73 45.2
Actinidia29929 Actinidia chinensis HOM05D003317 ORTHO05D003696 3.2e-11 72.0 71 43.7
Thecc.09G078000 Theobroma cacao HOM05D003317 ORTHO05D003696 3.2e-11 72.0 73 45.2
GSVIVG01035471001 Vitis vinifera HOM05D003317 ORTHO05D003696 3.2e-11 72.0 70 42.9
Medtr4g125440 Medicago truncatula HOM05D003317 ORTHO05D003696 4.2e-11 71.6 72 45.8
Sp3g24620 Schrenkiella parvula HOM05D003317 ORTHO05D003696 4.2e-11 71.6 100 40.0
TWI34G1043 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 4.2e-11 71.6 70 47.1
arahy.Tifrunner.gnm1.ann1.81HHLD Arachis hypogaea HOM05D003317 ORTHO05D003696 5.5e-11 71.2 69 44.9
Gohir.A06G076100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 5.5e-11 71.2 75 40.0
Gohir.D06G075100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 5.5e-11 71.2 75 40.0
Lj4g0026519 Lotus japonicus HOM05D003317 ORTHO05D003696 5.5e-11 71.2 68 47.1
Solyc08g061650.4 Solanum lycopersicum HOM05D003317 ORTHO05D003696 5.5e-11 71.2 69 47.8
Atru.chr7.1699 Acer truncatum HOM05D003317 ORTHO05D003696 7.2e-11 70.9 71 46.5
Cpa.g.sc28.54 Carica papaya HOM05D003317 ORTHO05D003696 9.4e-11 70.5 74 47.3
ECA240G4381 Erigeron canadensis HOM05D003317 ORTHO05D003696 9.4e-11 70.5 100 36.0
Medtr4g125410 Medicago truncatula HOM05D003317 ORTHO05D003696 9.4e-11 70.5 72 44.4
Nitab4.5_0000343g0140 Nicotiana tabacum HOM05D003317 ORTHO05D003696 9.4e-11 70.5 102 37.3
MD15G1216800 Malus domestica HOM05D003317 ORTHO05D003696 1.6e-10 69.7 75 42.7
Nitab4.5_0002966g0040 Nicotiana tabacum HOM05D003317 ORTHO05D003696 1.6e-10 69.7 66 45.5
Cc06_g12060 Coffea canephora HOM05D003317 ORTHO05D003696 2.7e-10 68.9 100 36.0
DCAR_028330 Daucus carota HOM05D003317 ORTHO05D003696 3.6e-10 68.6 69 43.5
PGSC0003DMG400018807 Solanum tuberosum HOM05D003317 ORTHO05D003696 4.7e-10 68.2 104 36.5
Nitab4.5_0008422g0030 Nicotiana tabacum HOM05D003317 ORTHO05D003696 6.1e-10 67.8 68 48.5
Psat4g017760 Pisum sativum HOM05D003317 ORTHO05D003696 8.0e-10 67.4 75 40.0
TPR.G9461 Trifolium pratense HOM05D003317 ORTHO05D003696 8.0e-10 67.4 73 39.7
PSO210G7636 Papaver somniferum HOM05D003317 ORTHO05D003696 1.4e-09 66.6 69 49.3
TPR.G55 Trifolium pratense HOM05D003317 ORTHO05D003696 1.8e-09 66.2 68 41.2
Actinidia29348 Actinidia chinensis HOM05D003317 ORTHO05D003696 2.3e-09 65.9 69 44.9
Lj1g0018915 Lotus japonicus HOM05D003317 ORTHO05D003696 2.3e-09 65.9 98 37.8
BcaB06g26884 Brassica carinata HOM05D003317 ORTHO05D003696 3.0e-09 65.5 100 37.0
Lj7A221G28 Lonicera japonica HOM05D003317 ORTHO05D003696 3.0e-09 65.5 67 46.3
vmacro12621 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 4.0e-09 65.1 61 49.2
HanXRQChr03g0065631 Helianthus annuus HOM05D003317 ORTHO05D003696 8.8e-09 63.9 61 45.9
Cc08_g01130 Coffea canephora HOM05D003317 ORTHO05D003696 1.2e-08 63.5 69 44.9
GSVIVG01015088001 Vitis vinifera HOM05D003317 ORTHO05D003696 1.2e-08 63.5 63 47.6
Psat4g017800 Pisum sativum HOM05D003317 ORTHO05D003696 1.5e-08 63.2 74 36.5
THA.LOC104815331 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 2.6e-08 62.4 100 38.0
CARHR191640 Cardamine hirsuta HOM05D003317 ORTHO05D003696 3.4e-08 62.0 94 35.1
PGR142G0733 Punica granatum HOM05D003317 ORTHO05D003696 3.4e-08 62.0 70 38.6
Aqoxy7G03984 Aquilegia oxysepala HOM05D003317 ORTHO05D003696 4.4e-08 61.6 102 35.3
Ca_21319_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 4.4e-08 61.6 69 40.6
BraA03t10357Z Brassica rapa HOM05D003317 ORTHO05D003696 5.7e-08 61.2 95 34.7
DCAR_004378 Daucus carota HOM05D003317 ORTHO05D003696 5.7e-08 61.2 64 42.2
Ciclev10010155m.g Citrus clementina HOM05D003317 ORTHO05D003696 2.2e-07 59.3 66 40.9
Sc18g0002500 Simmondsia chinensis HOM05D003317 ORTHO05D003696 2.2e-07 59.3 48 52.1
CARHR103720 Cardamine hirsuta HOM05D003317 ORTHO05D003696 3.7e-07 58.5 72 40.3
Prupe.7G199800 Prunus persica HOM05D003317 ORTHO05D003696 3.7e-07 58.5 78 41.0
FAN26G0708 Fragaria x ananassa HOM05D003317 ORTHO05D003696 6.3e-07 57.8 50 52.0
FAN26G2208 Fragaria x ananassa HOM05D003317 ORTHO05D003696 6.3e-07 57.8 50 52.0
Glyma.09G069401 Glycine max HOM05D003317 ORTHO05D003696 8.3e-07 57.4 63 46.0
Aa31sc133G60 Aethionema arabicum HOM05D003317 ORTHO05D003696 3.1e-06 55.5 61 42.6
SEGI_37822 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 5.4e-06 54.7 61 42.6
DCAR_001231 Daucus carota HOM05D003317 ORTHO05D003696 7.0e-06 54.3 64 34.4
SEGI_25513 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 7.0e-06 54.3 61 42.6


User provided reference genes

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