Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 2.7e-235 818.5 492 100.0
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 2.0e-121 440.3 276 74.3
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 5.1e-85 319.3 337 47.5
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 6.9e-82 308.9 310 49.4
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 3.4e-81 306.6 328 47.0
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 4.5e-81 306.2 327 48.3
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 5.9e-81 305.8 335 44.5
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 5.9e-81 305.8 316 48.4
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 7.7e-81 305.4 311 48.2
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.2e-80 303.9 313 49.2
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.2e-80 303.9 313 49.2
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.9e-80 303.5 317 48.9
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 2.9e-80 303.5 309 48.5
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.4e-79 301.2 316 48.7
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.9e-79 300.8 317 48.9
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 2.5e-79 300.4 317 48.3
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 2.5e-79 300.4 326 46.0
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 5.5e-79 299.3 327 46.8
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 5.5e-79 299.3 319 48.0
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 5.5e-79 299.3 328 47.3
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 9.4e-79 298.5 316 48.7
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 1.6e-78 297.7 318 47.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.7e-78 297.0 324 46.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 6.1e-78 295.8 316 48.4
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 6.1e-78 295.8 309 49.5
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 6.1e-78 295.8 322 46.9
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 7.9e-78 295.4 322 47.5
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 7.9e-78 295.4 311 47.6
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 7.9e-78 295.4 330 46.7
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 7.9e-78 295.4 341 46.0
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 7.9e-78 295.4 320 45.6
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.0e-77 295.0 317 47.9
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.0e-77 295.0 317 47.9
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.0e-77 295.0 309 46.0
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-77 294.7 316 48.1
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.4e-77 294.7 317 47.3
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.4e-77 294.7 309 45.6
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.8e-77 294.3 322 47.5
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 2.3e-77 293.9 321 45.5
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.3e-77 293.9 320 47.5
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 2.3e-77 293.9 329 45.3
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 3.0e-77 293.5 316 48.1
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 3.0e-77 293.5 313 48.2
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 6.7e-77 292.4 309 45.6
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 8.8e-77 292.0 315 47.3
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 1.5e-76 291.2 317 45.4
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 2.5e-76 290.4 337 43.9
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.3e-76 290.0 317 46.7
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 7.4e-76 288.9 324 46.3
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.4e-76 288.9 312 45.5
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 9.7e-76 288.5 313 47.6
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 9.7e-76 288.5 332 44.0
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 1.7e-75 287.7 347 43.8
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 4.8e-75 286.2 315 47.3
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 8.2e-75 285.4 313 47.9
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.1e-74 285.0 315 47.9
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.4e-74 284.6 312 46.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.8e-74 284.3 320 44.7
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 4.1e-74 283.1 258 53.1
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.2e-73 281.6 316 44.9
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.5e-73 281.2 313 46.6
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 1.5e-73 281.2 312 45.5
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 3.4e-73 280.0 332 45.2
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.5e-73 279.6 312 45.2
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 5.9e-73 279.3 311 45.0
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.9e-72 276.9 308 43.8
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 5.0e-72 276.2 349 44.1
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 6.5e-72 275.8 270 49.6
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.1e-71 275.0 322 42.5
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 7.2e-71 272.3 316 43.7
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.2e-70 271.6 331 41.7
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.2e-70 271.6 327 44.0
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 2.1e-70 270.8 329 42.6
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 3.6e-70 270.0 326 43.3
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.0e-69 268.5 319 44.8
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.0e-69 268.5 307 45.3
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.4e-69 268.1 251 47.8
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.8e-69 267.7 322 44.4
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 3.0e-69 266.9 322 44.1
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 2.0e-68 264.2 315 44.4
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 4.8e-67 259.6 331 39.6
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.4e-66 258.1 343 38.8
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.8e-66 257.7 320 40.9
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.8e-66 257.7 328 42.4
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 3.5e-65 253.4 246 53.7
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 7.7e-65 252.3 326 39.6
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.0e-64 251.9 331 39.0
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 2.9e-64 250.4 307 42.0
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.9e-64 250.4 307 42.0
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 2.5e-63 247.3 307 41.7
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.5e-63 247.3 307 41.7
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 7.2e-63 245.7 192 60.9
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 4.7e-62 243.0 318 38.4
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.0e-61 241.9 324 44.1
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 2.0e-60 237.7 318 40.9
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.6e-60 237.3 201 54.7
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 4.4e-60 236.5 318 42.1
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 1.7e-59 234.6 269 43.5
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.8e-59 233.8 310 40.6
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 6.3e-59 232.6 309 39.8
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 6.3e-59 232.6 207 53.6
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 6.3e-59 232.6 328 38.4
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 5.3e-58 229.6 323 38.1
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 3.2e-55 220.3 186 58.1
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 5.5e-55 219.5 244 45.5
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.2e-52 211.8 168 57.1
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.2e-52 211.8 263 42.6
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 3.1e-50 203.8 310 38.1
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 3.1e-50 203.8 310 38.1
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 3.3e-39 167.2 210 41.0
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.2e-36 158.7 172 44.2
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 1.2e-33 148.7 134 53.0
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 7.8e-33 146.0 116 56.9
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 5.0e-32 143.3 257 34.2
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.9e-26 124.8 223 35.9
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 4.6e-17 93.6 62 62.9
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 5.8e-12 76.6 100 40.0
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.2e-09 68.9 79 45.6
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 2.7e-09 67.8 64 48.4
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.9e-07 61.6 99 33.3
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 5.6e-07 60.1 42 52.4


User provided reference genes

Program Settings